Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09024 ATGGGGTTTAGTAATCCAAGATCTGAAAGGTTTGAAGATGATCCTGAAGTAGCAAACAATGGTGACAATGGGAAGGGGATTAAGCTTAAATACAACATTGATGGAACACAAATACCTGAGCCTAGTCGCAAAACGGTTCAAAAGAAGGTGACAGGGAAGAAAGGGAAGTTCTTGAAAGGTAGAGTATTGTCAAGAGTGTTTTCAGAGGACTATGACAGAGTAAAAAGAAGGATATTAGATCCTAGGGGACAAACCATCCATCGTTGGAACAAGATTTTCTTGGTAGCATGTTTAGTATCATTGTTTGTGGATCCTCTGTTCTTTTATTTACCAGTGGTTCAAGATGAAGTGTGCATTGATATTGGAATAACACTTGAAGTGACCCTCACAATTATCAGATCAGTGGTGGATGTCTTTTACATGATTCAGATTTTGATCAAGTTTCGTACAGCTTATGTTGCTCCTTCTTCCCAGGTATTTGGGAGAGGAGAGCTTGTTTTAGGGTATTCTAAGATTGCAGTTAGGTACCTTCGCAAGGGTTTCTGGTTAGACTTTATTGCAGCTTTGCCTCTTCCTCAGGTGTTGATTTGGATTGTTATCCCAACTCTTAGGGGTTCAACCATGGCAAACACTAAAAATGTCCTTAGGTTTTTCATCATCTTCCAATATCTTCCGAGGTTGTTTTTGATTTTTCCACTTTCATCACAAATTGTAAAAGCTACAGGAGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACCTTATGCTTTACATGTTGGCAAGCCATATTTTAGGAGCTTGCTGGTATCTTCTATCAATAGAACGTCAAGAAGCATGTTGGAGAAGTGTGTGTGATTTGGAGAAGTCATCTTGTCAATATGGATTCTTTGACTGCCACAGGGTTGATGATACTCTTAGGGTGTCTTGGTTTATAGCTAGTAATATCACAAATTTATGCTCACCAGATGCTGACTTTTATCAGTTTGGTATATATGCTGATGCTATGACTTCTGAAGTTACATCCTCGGCATTCTTTAATAAGTACTTCTATTGTCTCTGGTGGGGCCTAAGGAATTTGAGTTCTTTGGGACAAGGCCTTCTTACTAGCACTTTTGTTGGAGAAATAATGGTAGCCATTGTTGTTGCAACCCTTGGATTAGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGACATACCTCCAATCAATAACAGTTCGGCTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTAAGAGAATCTGTGCGTAAATATGATCAATATAAATGGGTGGCTACACGAGGTGTAGATGAAGAAACTATTCTCAAAGGACTTCCATTGGATCTCAGGAGAGACATCAAGCGCCACCTTTGTCTTGAACTAGTTCGAGGAGTTCCATTATTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCTGCATTATGCACCGAAGGGACCTATCTTGTTCGTGAGGGTGATCCTGTGAATGAGATGCTCTTCATAATTAGAGGCCATCTTGATTCTTACACCACAAATGGAGGCCGTGCTGGATTCTTCAACTCATGCCGTATTGGGCCAGGTGATTTCTGTGGTGAAGAGCTATTAACATGGGCCTTAGACCCAAGACCAAGTGTGATACTCCCATCTTCCACTAGAACAGTTAAAGCCATATCAGAAGTAGAGGCCTTTGCACTCATAGCTGAAGACTTAAAATTTGTTGCATCTCAATTTAGAAGACTACACAGTAAACAACTGAGGCATAAATTCAGGTTTTATTCACACCAATGGAGAACATGGGCTGCTTGTTTCATTCAAGCTGCATGGAGACGGCACAAGAAAAGGAAAGAAGCTGCTGAATTAAGGGCCAGGGAGAATCTTGCAGCTTCTGAGCCTGAAACACCAACATCTGGTTCAGGCTTTGCTATGTATGCAAAACCAAAAAGGGTGGGGAGGAGCACTAGGAAAGGTGTCAATATGCATTCTGGGACAGACTCTGGGGTAGTTAGTTCTTTGCAGAAGCCAGCAGAACCAGACTTTGATGAATAA 2106 0.4131 MGFSNPRSERFEDDPEVANNGDNGKGIKLKYNIDGTQIPEPSRKTVQKKVTGKKGKFLKGRVLSRVFSEDYDRVKRRILDPRGQTIHRWNKIFLVACLVSLFVDPLFFYLPVVQDEVCIDIGITLEVTLTIIRSVVDVFYMIQILIKFRTAYVAPSSQVFGRGELVLGYSKIAVRYLRKGFWLDFIAALPLPQVLIWIVIPTLRGSTMANTKNVLRFFIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCDLEKSSCQYGFFDCHRVDDTLRVSWFIASNITNLCSPDADFYQFGIYADAMTSEVTSSAFFNKYFYCLWWGLRNLSSLGQGLLTSTFVGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPPELRESVRKYDQYKWVATRGVDEETILKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEAAELRARENLAASEPETPTSGSGFAMYAKPKRVGRSTRKGVNMHSGTDSGVVSSLQKPAEPDFDE. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09024 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 699 - -
Seca3g09024 701 FunFam Cyclic nucleotide-gated ion channel 1 408 472 - -
Seca3g09024 701 ProSiteProfiles cAMP/cGMP binding motif profile. 481 578 IPR000595 -
Seca3g09024 701 Gene3D Helix hairpin bin 409 472 - -
Seca3g09024 701 ProSiteProfiles IQ motif profile. 617 645 IPR000048 GO:0005515
Seca3g09024 701 SUPERFAMILY cAMP-binding domain-like 411 607 IPR018490 -
Seca3g09024 701 SMART cnmp_10 481 612 IPR000595 -
Seca3g09024 701 Gene3D - 91 407 - -
Seca3g09024 701 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g09024 701 Pfam Ion transport protein 89 408 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g09024 701 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09024 701 PRINTS EAG/ELK/ERG potassium channel family signature 350 367 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09024 701 PRINTS EAG/ELK/ERG potassium channel family signature 444 451 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09024 701 PRINTS EAG/ELK/ERG potassium channel family signature 394 403 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09024 701 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09024 701 PRINTS EAG/ELK/ERG potassium channel family signature 133 143 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca3g09024 701 FunFam Cyclic nucleotide-gated ion channel 1 479 597 - -
Seca3g09024 701 SUPERFAMILY Voltage-gated potassium channels 80 403 - -
Seca3g09024 701 CDD CAP_ED 481 612 IPR000595 -
Seca3g09024 701 MobiDBLite consensus disorder prediction 676 690 - -
Seca3g09024 701 Gene3D Jelly Rolls 479 599 IPR014710 -
Seca3g09024 701 MobiDBLite consensus disorder prediction 642 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09024 Seca-Chr3 227970418 227974954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09024 54 700 Ion Channels AT2G28260 76.198 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09024 K05391 - gmx:100786868 1167.91