Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09014 ATGTCTGAGGATATTGGTAACATGAAGGACTCTTGGTTTTTCGACAAGAATTTTAATGCCCTCTCAGATGAGATGTTTGATGATGTCCTCAAGTTTTTCGATTTCCCTCTGGAAGATGTGGAAACTAATGCTGTTGAAGAAGACTGGGATGCTCAATTTAAACGCCTTGAAGAGCCTTGTTTTGATGTTTTTTCAGTATCATCAGCTGGGCTGTGTGGGAAAACTCAAAATGAAAATCACCAATTTGGGAAGGGCTTCTCTGCTTCTCAGTGTAATGGGATTTCCCCAATAAAACAGCTGGAAAAGACTGCAGGAGCAACATATGGAAAAACCATTCCAAACCAGAATGTCTCTTTCATTGGAAAAGATTTTAAACAGTTCCAAACCTACAGCCCAGTTTCTGTTTTTGAAAGCAGCAGTTCTTCCTCAGTTGAGAATTCCAACTTTGATCTACCTGTCATCCCGGTAAAGCGTGCTCGAAGTAAACGCATGCGTCCTTCAAGCCTCAGTCATCTATTCTCAATTCCTTTCATCCATAACTCACCAGCTTTGCAAAAATATCAAAGGACACCTGCCTCTGAATTGGATTTTGAAACATGTGTTGCTGGGAAACTACCAAACACAGTAAAAAAACAAAGGAAAAAGGATATGTCCCTGCTATCAGGTGATGTTGAGATGATGAAGGGATCCTCATCACAGGATTCAGTTGTCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCGCAATGGAGAGAGGGACCTATGGGACCCAAGACACTATGCAATGCTTGTGGTGTTCGTTACAGGTCTGGCCGCCTCTATCCTGAATACCGGCCTGCTGCTAGCCCGACTTTTATAGCATCACTGCACTCAAACTGTCACAAGAAGGTCCTGGAGATGAGAGGAAAGGTCATGCAGGAAGCTGTTAGGGGTCCTATGCTGGCTTCATCAAATCTTCATGGAAACTCTGTAGGATAA 984 0.4319 MSEDIGNMKDSWFFDKNFNALSDEMFDDVLKFFDFPLEDVETNAVEEDWDAQFKRLEEPCFDVFSVSSAGLCGKTQNENHQFGKGFSASQCNGISPIKQLEKTAGATYGKTIPNQNVSFIGKDFKQFQTYSPVSVFESSSSSSVENSNFDLPVIPVKRARSKRMRPSSLSHLFSIPFIHNSPALQKYQRTPASELDFETCVAGKLPNTVKKQRKKDMSLLSGDVEMMKGSSSQDSVVPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLYPEYRPAASPTFIASLHSNCHKKVLEMRGKVMQEAVRGPMLASSNLHGNSVG. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09014 327 PANTHER GATA TRANSCRIPTION FACTOR 41 307 - -
Seca3g09014 327 Pfam GATA zinc finger 241 274 IPR000679 GO:0006355|GO:0043565
Seca3g09014 327 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 296 - -
Seca3g09014 327 ProSitePatterns GATA-type zinc finger domain. 241 266 IPR000679 GO:0006355|GO:0043565
Seca3g09014 327 FunFam GATA transcription factor 230 316 - -
Seca3g09014 327 CDD ZnF_GATA 240 287 IPR000679 GO:0006355|GO:0043565
Seca3g09014 327 Gene3D - 232 313 IPR013088 GO:0006355|GO:0008270
Seca3g09014 327 SMART GATA_3 235 285 IPR000679 GO:0006355|GO:0043565
Seca3g09014 327 ProSiteProfiles GATA-type zinc finger domain profile. 235 271 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09014 Seca-Chr3 227797414 227802448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09014 21 305 C2C2-Gata Transcription Factor Family AT1G08010 40.625 3.47e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca3g09014 GATA 7.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09014 - - gmx:100813303 475.707