Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09013 ATGAAGGAAGGTGAAAAGGGGTTGGATCCACAACTATGGCACGCATGCGCCGGAGGCATGGTTCAAATGCCACCGGTGAACTCCAAAGTGTTCTACTTTCCACAAGGGCATGCCGAACACGCACAGTGCAACGTTGATTTCGGAGCTTCCCTGAGGATTCCACCACTCATTCTCTGCCGCGTGGCAGCTGTTAAATTCTTAGCCGACCCAGAAACCGATGAAGTCTTTGCAAGGATAAGCTTGGTTCCTCTGAGGAATTCAGAGCTTGATTACGAAGATGGTGGTGGTGGTGATGGCAATAATGCCTCGGAAAATCCAGAAAAGCCTGCATCTTTTGCAAAGACGCTAACTCAATCCGATGCCAACAATGGTGGGGGGTTCTCTGTTCCGAGGTACTGTGCAGAAACCATCTTTCCCCGGCTCGATTACTCGGCTGAACCGCCGGTTCAGACCGTGATCGCCAAGGATGTTCACGGTGAGGTTTGGAAGTTTAGGCATATTTATAGAGGCACTCCACGTCGCCACCTGCTTACAACTGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCAGGGGATTCTATTGTGTTTCTGAGAGCTGAAAATGGGGATCTCTGCGTTGGGATTCGAAGGGCCAAGAGGGATATTGTTGGTGGGTCAGATGTACCTTCTGGGTGGAGCTCTGGTACTGGAAGTGTTGGTCTTGGACCTTATGGTGCTTTTTCTGTTTTCTTGAAAAATGGTTGTGGGAACTCCTCAAGCCCTGGTGGTGGTGGTGGGGGTAATAATCTGTGTGGGAGAAGACCAAAAGTGAGTCCTGAATCTGTGAGGGAAGCTATGACACTTGCTGCTAGCTATCAACCTTTTGAGGTTGTTTATTACCCTAGAGCAAGCACCCCTGAGTTTTGTATTAAGACTTCAGCTGTTAGGGCAGCTATGAGAATTCAATGGTGCCCTGGGATGAGGTTTAAGATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGGACCATAGCTTCTGTTCAGGTTGTTGATCCTATCCGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACTTGGGACGAGCCAGATTTGCTACACAATGTGAAGCGTGTAAGCCCATGGTTGGTTGAGTTGGTATCAAACATGAATGTAATCCATCTCACACCCTTTTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAACACCCAGACTTCCCCCTTGATGTTCAATTTCCAATACCACCAACATTTTCAGGCAACCCCCTTGGGCCTAATAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTGTCAGATCTCCACCTTAACAATAAACTTCAGTTGGGGGTGCTTCCAACTAATGTTCATCAACTTGATTTGCACACTGGGATTTCTAATGGCAACATAACCAACCATGATAACAAGAGCAAAGAAAATTTATCATGCTTGCTGACCATGGGAAATTCAAACAAGAGTTTGGAGAAATCTGATAATGTTAAGAGACACCAATTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCTAGAAGAGCTTCTAGTGATGTGTTGTTGTCTCAGAATTGTACAGAGAAAAACTCACCACTAGATGAGAATAAGGACAAGGACAAGGACAAAGACAAAGAGAAGTGGTTTTTTACTAGTGATTCACAATCTTCAGTTTCACAAGGAAATGGTGAGTTTTCTTGGCAAGTTGGTTTGGATACCGGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTGGGAAGGACACTTGACTTGTCACGTCTTGGTTCTTATGAAGAACTGTATAGAAGACTGGCCAACATGTTTGGAATAGAAAAGTCTGATATGTTGAGTCATGTACTCTACCGTGATGCAACAGGTGCTCTTAAACAAACTGGAGAAGAACCCTTCAGTGACTTCATGAAAACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAGATACTAGAAGGGTTTGGATTACAGGAACTCGGAATGCTGAACGTGGATTAGATGCATCAAACAAGACAGGTCCTCTGAGTATATTTGCTTAA 2139 0.4521 MKEGEKGLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQCNVDFGASLRIPPLILCRVAAVKFLADPETDEVFARISLVPLRNSELDYEDGGGGDGNNASENPEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRDIVGGSDVPSGWSSGTGSVGLGPYGAFSVFLKNGCGNSSSPGGGGGGNNLCGRRPKVSPESVREAMTLAASYQPFEVVYYPRASTPEFCIKTSAVRAAMRIQWCPGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMNVIHLTPFSPPRKKLRFPQHPDFPLDVQFPIPPTFSGNPLGPNSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNNKLQLGVLPTNVHQLDLHTGISNGNITNHDNKSKENLSCLLTMGNSNKSLEKSDNVKRHQFLLFGQPILTEQQISRRASSDVLLSQNCTEKNSPLDENKDKDKDKDKEKWFFTSDSQSSVSQGNGEFSWQVGLDTGHCKVFMESEDVGRTLDLSRLGSYEELYRRLANMFGIEKSDMLSHVLYRDATGALKQTGEEPFSDFMKTAKRLTILTDSGSKDTRRVWITGTRNAERGLDASNKTGPLSIFA. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09013 712 ProSiteProfiles PB1 domain profile. 600 680 IPR000270 GO:0005515
Seca3g09013 712 FunFam Auxin response factor 110 214 - -
Seca3g09013 712 SUPERFAMILY DNA-binding pseudobarrel domain 109 213 IPR015300 -
Seca3g09013 712 Gene3D - 318 391 - -
Seca3g09013 712 Gene3D - 110 214 IPR015300 -
Seca3g09013 712 Gene3D - 599 684 - -
Seca3g09013 712 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca3g09013 712 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Seca3g09013 712 Pfam Auxin response factor 280 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca3g09013 712 CDD B3_DNA 111 212 IPR003340 GO:0003677
Seca3g09013 712 SMART B3_2 112 214 IPR003340 GO:0003677
Seca3g09013 712 FunFam Auxin response factor 318 391 - -
Seca3g09013 712 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09013 Seca-Chr3 227785240 227788270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09013 1 682 B3 DNA Binding Superfamily AT4G30080 60.465 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca3g09013 B3 4.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09013 - - gmx:100778135 1115.91