Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g09010 ATGGCCATGGCTGTGGCTGAACACAGAGAAAGCAGCATTGACAGGCACCTTGATTCTTCTGGGAAATATGTGCGCTACACCGCGGAACAGGTTGAAGCTCTTGAACGGGTTTACACAGAGTGCCCCAAACCCAGTTCCTTGCGAAGGCAGCAACTGATCCGAGAGTGCCCCGTTCTCGCAAACATCGAGCCTAAGCAGATCAAAGTTTGGTTCCAGAATCGCAGGTGGGTTGATATGATGTGGTTTGTGGTGTGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCTCGGCTTCAGGCTGTGAACCGGAAACTAACAGCAATGAACAAGTTGTTGATGGAGGAAAATGATCGGTTGCAGAAACAGGTGTCACAGCTGGTATGCGAGAATGGGTTCATGAAGCAGCAATTGCATACATTGCAGCCTTCAGCAGCAGGAACTACTGATGGGAATGGTGATTCGGTGGTTACTACTCCTCAGAATTCTATGAGAGATGCTAATAACCCCGCTGGATTCCTATCAATTGCAGAGGAGATGTTGGCAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCTGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTAAGAAGATTGCGGAGATCCTAAAAGATCGTCCATCTTGGTTTCGGGATTGTCGGAGTCTAGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGACATATGCTCCAATGACACTGGCTCCTGCCCGGGATTTCTGGACTCTAAGATACACTACAAATTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTATCTGGTTCTGGCGCTGGGCCTAATGCTGCTGCTGCCGCTCAGTTTGTGAGGGCTGAAATGCTCCCTAGTGGCTACTTGATTCGACCATGTGACGGTGGAGGATCAATCATCCACATTGTAGACCACCTAAACCTACAGGCATGGAGTGTGCCAGAAGTGATCCGACCACTATATGAATCATCAAAAATGGTAGCTCAGAGAATGACAATTGCAGCACTTCGCTACATCAGGCAAATAGCTCAAGAAACAAGTGGTGAAGTGGTATATGGCTTGGGTAGGCAGCCTGCTTCTCTGAGAACTTTTAGCCAAAGGTTGAGCAGAGGCTTCAATGATGTTGTCAATGGATTCAATGATGATGGCTGGTCTGTGCTGAACTGTGATGGCGCTGAGGATGTTATTATTGCTGTTAATTCAACCAAAAATTTGAGTGGCACTTCTAATCCAGCAAGTTCCCTGACATTGCTTGGAGGAATTCTCTGTGCAAAAGCTTCTATGTTAATCCAAAACATCCCTCCTGCAGTTTTAATTCGCTTTCTGAGGGAACATCGCTCAGAATGGGCTGATTTTAATGTTGATGCCTATTCTGCCGCATCACTTAAAGCTGGCTCCTATGCCTATCCGGGAATGAGGCCTATGAGATTCACTGGCAGTCAAATGATCATGCCTCTTGGACATACAATTGAAAATGAAGAGATGCTAGAAGTTATCCGGCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGTTATGTAGTGGAATTGATGAGAATGCTGTTGGGGCTTGTGCTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCGGATGATGCTCCATTGGTGCCTTCTGGTTTCCGCATTATCCCGTTGGATTCACAACCAGTTGAGTCCTCTTTCTTTGTAGGTGATAAAAAGGACACAATGACAACAAATCGAACATTGGATCTAACATCTGGTCTGGAAGTAGGCCCAGCAACAAATCATCCTGCTGGAGATGCATCATCATGTCATAACAATCGATCAGTGTTGACTATTGCCTTCCAGTTTCCATTCGAGAGCAATTTGCAGGATAATGTTGCAGTCATGGCACGTCAGTATGTCCGTAGTGTAATTTCCTCCGTGCAGACGGTTGCCATGGCTATATCTCCATCTGGTGTAAATCCAGCTGTTGGAGCAAGACTCTCTTCTGGCTCTCCAGAAGCTCTTACGCTAGCTCAATGGATCCGCCGAAGTTATAGGCAAGTCTGCACGACGGAACTGCTGAGATCTGACTCTCTTGTCGGTGATTTGGTACTGAAACATTTGTGGCATCATCAGGATGCTATCTTGTGCTGTTCTATGAAGTCAATGCCCGTGTTCATCTTTGCAAACCAGGCCGGTCTTGACATGTTGGAAACAACTCTAGTGGCTTTACAAGACATCACATTGGATAAAATATTTGATGAGTCTGGACGCAGGGCATTGTTTGCAGATTTTGCCAAGTTAATGCAGCAGGGGTTTGCTTATCTGCCAGCTGGGATCTGCATGTCCACAATGGGACGGCATGTTTCATATGACCAAGCCATCGCTTGGAAAGTGCTTGCTGAAGAAGATAACAGTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTGTGA 2586 0.4617 MAMAVAEHRESSIDRHLDSSGKYVRYTAEQVEALERVYTECPKPSSLRRQQLIRECPVLANIEPKQIKVWFQNRRWVDMMWFVVCRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVCENGFMKQQLHTLQPSAAGTTDGNGDSVVTTPQNSMRDANNPAGFLSIAEEMLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPKKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPMTLAPARDFWTLRYTTNLDNGSLVVCERSLSGSGAGPNAAAAAQFVRAEMLPSGYLIRPCDGGGSIIHIVDHLNLQAWSVPEVIRPLYESSKMVAQRMTIAALRYIRQIAQETSGEVVYGLGRQPASLRTFSQRLSRGFNDVVNGFNDDGWSVLNCDGAEDVIIAVNSTKNLSGTSNPASSLTLLGGILCAKASMLIQNIPPAVLIRFLREHRSEWADFNVDAYSAASLKAGSYAYPGMRPMRFTGSQMIMPLGHTIENEEMLEVIRLEGHSLAQEDAFVSRDIHLLQLCSGIDENAVGACAELIFAPIDEMFPDDAPLVPSGFRIIPLDSQPVESSFFVGDKKDTMTTNRTLDLTSGLEVGPATNHPAGDASSCHNNRSVLTIAFQFPFESNLQDNVAVMARQYVRSVISSVQTVAMAISPSGVNPAVGARLSSGSPEALTLAQWIRRSYRQVCTTELLRSDSLVGDLVLKHLWHHQDAILCCSMKSMPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRRALFADFAKLMQQGFAYLPAGICMSTMGRHVSYDQAIAWKVLAEEDNSVHCLAFSFINWSFV. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g09010 861 CDD bZIP 86 124 - -
Seca3g09010 861 ProSiteProfiles 'Homeobox' domain profile. 17 75 IPR001356 GO:0003677
Seca3g09010 861 Pfam START domain 175 382 IPR002913 GO:0008289
Seca3g09010 861 SUPERFAMILY Bet v1-like 174 386 - -
Seca3g09010 861 SMART START_1 174 384 IPR002913 GO:0008289
Seca3g09010 861 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 861 IPR044830 GO:0003700
Seca3g09010 861 Gene3D - 16 78 - -
Seca3g09010 861 Pfam MEKHLA domain 717 860 IPR013978 -
Seca3g09010 861 Pfam Homeodomain 22 75 IPR001356 GO:0003677
Seca3g09010 861 ProSiteProfiles START domain profile. 165 393 IPR002913 GO:0008289
Seca3g09010 861 CDD homeodomain 22 75 IPR001356 GO:0003677
Seca3g09010 861 SUPERFAMILY Homeodomain-like 18 76 IPR009057 -
Seca3g09010 861 Gene3D - 209 391 IPR023393 -
Seca3g09010 861 SMART HOX_1 19 94 IPR001356 GO:0003677
Seca3g09010 861 Coils Coil 88 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g09010 Seca-Chr3 227740579 227746665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g09010 1 861 Homeobox Transcription Factor Family AT5G60690 79.056 0.0 1409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g09010 START 1.9e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g09010 K09338 - gmx:100804870 1466.83