Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08999 ATGGCCAAAGACGTTGAGGTTGCAGAGCAAGCTTCATACTCAGCTAAGGACTACCATGACCCACCTCCAGCTCCTTTGATCGACCCAGAGGAGCTCACTAAGTGGTCTTTGTACAGAGCCGCCATAGCAGAGTTCATAGCAACCCTTCTCTTCCTTTACATCACTGTGTTGACCATTATTGGTTACAAGAGACAGACTGACACAACAATTCCAGGTAACACAGAGTGTGATGGTGTTGGCATTTTGGGCATAGCTTGGGCCTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGAGGGCACATAAACCCAGCTGTGACATTAGGGTTGTTCTTGGCACGCAAGGTGTCTCTTGTAAGGGCGTTACTTTACATGATAGCACAGTGTTTAGGTGCTATCTGTGGTGCTGGACTTGCCAAGGGCTTCCAAAAATCATACTACAACAGGTATGGAGGTGGGGTTAACTTGGTGTCAGATGGATATAACAAAGGCACAGCTTTGGGAGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCTACTGATCCTAAGAGGAGCGCTAGGGACTCTCATGTTCCTGTGTTGGCACCACTCCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCTATTACCGGTACTGGCATTAACCCAGCAAGGAGTTTTGGACCAGCTGTGATCTTCAACAATGACAAAGCCTGGGATGACCAATGGATTTACTGGGTTGGACCATTTGTTGGGGCTTTGGCGGCTGCAATCTACCACCAATACATTCTAAGAGCAGCAGCCATCAAGGCTCTTGGATCCTTCAGGAGCAACGCTTAA 861 0.4774 MAKDVEVAEQASYSAKDYHDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQTDTTIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTLGLFLARKVSLVRALLYMIAQCLGAICGAGLAKGFQKSYYNRYGGGVNLVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGALAAAIYHQYILRAAAIKALGSFRSNA. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08999 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Seca3g08999 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 275 IPR034294 -
Seca3g08999 286 Pfam Major intrinsic protein 31 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08999 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08999 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08999 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08999 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08999 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08999 286 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08999 286 CDD MIP 39 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08999 286 FunFam Probable aquaporin PIP1-2 24 286 - -
Seca3g08999 286 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g08999 286 SUPERFAMILY Aquaporin-like 30 272 IPR023271 -
Seca3g08999 286 Gene3D Glycerol uptake facilitator protein. 24 286 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08999 Seca-Chr3 227505216 227506854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08999 1 284 Major Intrinsic Protein MIP AT5G60660 79.930 1.19e-170 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08999 K09872 - gmx:732604 551.206