Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08997 ATGCAATGGCCTTGTTTTGACTGCTATAAACTAAAAGATCCAGGTGGAATAACAGCGAAGATAGATGGGAATAATGACATTCCAACACATACACCTCTTCAAGAAGCTCAAGTTAACAAACCAGGAGGACGAAGGGTTGTTGCTATTGTTGGTGGCATTGTTGCTGCCTTAGTCATCATTGTCATTGTGGTGATTGTCTATATCTGCCTGAGGCATCTTAAAAGATTTGTAAGGCAAACATCTGAGACTGCTTCTTCTACGCCATCTCCAACTGTTGAGATGGGAAGAGTGAACACCTCACAGTATGTAAATGCTTTCTCTCCACATTATCCACAGAACACAAGGCAGTTAACAATTTTGGAACTAGAACAAGCTACACTAAATTTCAGCCAAAGTAATATTATAGGTGAAGGTGGATTTGGTATTGTATACAAGGGATTGCTTCAAGATGGATCCATTGTGGCTATAAAAAGGCGCCTATTTGCTCTGATACAAGATTTCATCCCTGAGGTGAAGCAGATAGCTCACATCCACCACATTCATCTTGTCAAGCTTATAGGCTATTATGAAGATAGCTATCAACAATTACTTGTGTATGAATATCTCCCTAATGGAAATGTAGGGAGTCACCTATATGACAGTAAAGGTTTGCCTATTGGAAAGTTAGACTTGCGGAGAAGGTTATCCATTGCTATAGGCGCGTCCAAAGGACTGGAACATCTTCACAGTTTGGTCCCTCCTAAGGTTCACACAAATTTTAGAACTAGCAATGTTCTGTTAGATGAAAATTATACCGCCAAGGTTTCTGATTATGGATTTTTCAAATTAAAAACAAAAATTAATCAGGCTAGCTCATCTTCAAATGTAGACTGCTTTCTTGACCCAGAGTTGAGCTTATCAGAAAAGTATTCGGAGCAGAGTGATGTATACAGTTTTGGGGTATTCTTAATAGAGTTGATAAGTGGCTGTGAAGCACATAGTAGAAACATGTCAAATCCAGATGAAAATCTAGTGTTTCAGGCAAAAGGTAGCACTAGCTTGGACAAGTTTGTTGACATAACGCTGGGAGACCAAGAAAAGCATGCTGCAAGACAAATGATGAATTTGGCGTTGCTATGTGTGGATGTGACTTTTAGAAGACCATCAATGGCTCAAATTGTGCAAGAGCTGGAGCGAATTCAAAGGGATATTGCTCCTTTGTATTGTCAAGACAATGAGGAGATAGGTGTGGTGACTCTTGGGAGTGAGCTCTTTCAATAA 1260 0.3968 MQWPCFDCYKLKDPGGITAKIDGNNDIPTHTPLQEAQVNKPGGRRVVAIVGGIVAALVIIVIVVIVYICLRHLKRFVRQTSETASSTPSPTVEMGRVNTSQYVNAFSPHYPQNTRQLTILELEQATLNFSQSNIIGEGGFGIVYKGLLQDGSIVAIKRRLFALIQDFIPEVKQIAHIHHIHLVKLIGYYEDSYQQLLVYEYLPNGNVGSHLYDSKGLPIGKLDLRRRLSIAIGASKGLEHLHSLVPPKVHTNFRTSNVLLDENYTAKVSDYGFFKLKTKINQASSSSNVDCFLDPELSLSEKYSEQSDVYSFGVFLIELISGCEAHSRNMSNPDENLVFQAKGSTSLDKFVDITLGDQEKHAARQMMNLALLCVDVTFRRPSMAQIVQELERIQRDIAPLYCQDNEEIGVVTLGSELFQ. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08997 419 Gene3D Phosphorylase Kinase; domain 1 92 201 - -
Seca3g08997 419 SUPERFAMILY Protein kinase-like (PK-like) 109 400 IPR011009 -
Seca3g08997 419 Gene3D Transferase(Phosphotransferase) domain 1 202 409 - -
Seca3g08997 419 Pfam Protein tyrosine and serine/threonine kinase 132 390 IPR001245 GO:0004672|GO:0006468
Seca3g08997 419 ProSitePatterns Protein kinases ATP-binding region signature. 135 157 IPR017441 GO:0005524
Seca3g08997 419 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 56 393 IPR047117 -
Seca3g08997 419 ProSiteProfiles Protein kinase domain profile. 129 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08997 419 FunFam receptor-like serine/threonine-protein kinase NCRK 103 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08997 Seca-Chr3 227471321 227475339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08997 38 395 Receptor kinase-like Gene Family AT4G02010 34.667 1.94e-54 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Seca3g08997 PK_Tyr_Ser-Thr 6.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08997 - - aprc:113855951 654.055