Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08993 ATGAGTGCTGAGGAAAAACGTGATGCACCTTCTTGCAAACGAACAGCTTCTCTCCCAGTTCCCAAGGTTGATGATCTAATGGAGGTAGCTGATGAAAATTCACATGCTCATCATTGGAAGCGACAAAATCTTCTTCTGGAAATACCATCCAGAACAACACCAGCTTCTAAGGATTTTGTTGCAATAAGGATGCCACTGACGCCAAGTCCAACTCCAACCCATAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTTGATGCTCCGAGTAATAACTGTCCAGGGCCTTCAGCATCAAGAACCAAATCATCATCCATAAGAAGCATCTTACCAAAAATTGGCTTCAGGAATCGGACATCATCAGATATTGAAAAGGCTATAATTGCTGTTCCAGAAGGTTCTTCTTCAGGTCCTCAAGAAACCAAGTCCTCAATCTCAAGATCAGTGTCCTTGTCTAAGATATTTACTCCTAAGATTAAGAGAACGTCATCATTACCAGTAGAAGAAATTGGGCGTGCTAACACAGAATCTGCTCTGAGTGGATGTATTGGTGGTTCTCCATATAGAAGAGAGACCCAGGGGACTATAGCTCGCACTCGTTCAGAGCCTGTCAACAACCAAGATAAAAGCATAAGGAAAATGGATAGGTTCTTCCGCGTTATTCCTTCCACTCCTCGAGTAAAGGAAGTGAATGAATGGTTGAACTCATCCACAGCAAAGAAAGCCTTCGTTGGTTCAGAAAATGATGGTGATGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTCAAGCTGGAATGTAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTTAAGTGGTTTAGTATCAAAGGTAATAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCAGACTGTTCGAACTCAGAATAATGGAGCAAGGTCTACGCAGGAAGATGACTTCAGATTATTGTTACACACAGCACTTTTAATTTGTCTGCTCAATTTGACAGGATTTGGCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTATTGGTAAGAAAAAAAGTCCTCTCAGATCTATCTATCAGTGTAACAATTCTGTATAGGCTCAGCCCTCAGTTATTCAACTCTTTGCAGGTTGGAAAAATGGGAACCAGAGCAATTTTCATATCTCTTCCATTTTCCTGTGTTCTTGGTCTACTCTCCTCAATGACATCATCAACCATGGTGAAGAGCAGCAAGTTCATCTGGATTTATGCAGGTGCCCAATTTGCTTTGGTGGTTCTCTTCGCACATATATTTTACTCCATGGTTGGTAAGCAAGCAGTTCTGTCAATCCTTCTTGCATCATTTGCTGGGTTTGGTGTAGTGATGAGTGGAAGTTCAATTCTTGTGGAGTTAGTCAGATGGAAAAGAAGATGGCAGGCTTTATCAGAGCATCAGAATCAGCATGCTTCTCAAGTAATGACACAAGATGGACAATACTCTCATTCAGGCCTTCCCAACAGCAATCAAACTGCTGTGTAA 1593 0.4237 MSAEEKRDAPSCKRTASLPVPKVDDLMEVADENSHAHHWKRQNLLLEIPSRTTPASKDFVAIRMPLTPSPTPTHKKVNFLVTSRSVDAPSNNCPGPSASRTKSSSIRSILPKIGFRNRTSSDIEKAIIAVPEGSSSGPQETKSSISRSVSLSKIFTPKIKRTSSLPVEEIGRANTESALSGCIGGSPYRRETQGTIARTRSEPVNNQDKSIRKMDRFFRVIPSTPRVKEVNEWLNSSTAKKAFVGSENDGDGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIQTVRTQNNGARSTQEDDFRLLLHTALLICLLNLTGFGSMLAYFCFLEQLLVRKKVLSDLSISVTILYRLSPQLFNSLQVGKMGTRAIFISLPFSCVLGLLSSMTSSTMVKSSKFIWIYAGAQFALVVLFAHIFYSMVGKQAVLSILLASFAGFGVVMSGSSILVELVRWKRRWQALSEHQNQHASQVMTQDGQYSHSGLPNSNQTAV. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08993 530 MobiDBLite consensus disorder prediction 510 530 - -
Seca3g08993 530 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Seca3g08993 530 SUPERFAMILY RING/U-box 258 313 - -
Seca3g08993 530 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Seca3g08993 530 CDD RING_CH-C4HC3_MARCH 262 310 - -
Seca3g08993 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 317 IPR013083 -
Seca3g08993 530 SMART ringv_2 261 310 IPR011016 GO:0008270
Seca3g08993 530 PANTHER OS02G0165000 PROTEIN 28 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08993 Seca-Chr3 227411336 227417065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08993 251 316 C3H Transcription Factor Family AT2G37950 46.269 3.94e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08993 - - cam:101488558 596.275