Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08990 ATGATCATGGGAGATTATCAGAGTTTTTCATTTTCCAGAATGATGGGCTGTTTTAGTTGCTTCGGGTTGATCAAAAAACAAAAACGTCGACGGACTAAGCGTGGCATCAACAATTTTCTCTCCCACGGGCTATTGACGGATGGAGAAACTGAAGGTGATGAGGTTTCATATAGTGGTGAGGCTACTAGTAACACCACCAGTGGAGATGATAATGAGGTGCAAATTTTACCCAACCGGTCTGAGGAAATTTTGACCTTCAGAGCTGAGAATGGCATGATTTGTAGGCCGTTTCCTGTTAAGGAAACTTGCAAACTTGTTCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGAGAATATAAGATTGGTTCTGGTAGCTATGGCAAAGTGGCTCTTTATCGAAGTTCTGTTGATGAAAAGCATTATGCAATTAAGGCCTTTCATAAGTCTCATTTACAGAAGCTTCGAGTTGCACCATCTGAGACTGCCATGACTGATGTTCTACGTGAGGTAATGATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTGATTGAGGTGATTGATGACCCAGAGTCGGATGACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTTCAGGCCGTCCTTGTGCCTTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCGGGATTAACATATCTTCATGCTCATAATATAGTTCATGGAGATATAAAACCCGATAATCTGTTAATTACCCGTCATGGCAAAGTAAAGATAGGGGATTTCAGTGTCAGCCAAGCTGTTGAGGATGGTAATGATGAACTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGCCTTACTTATCATGGTAAAGCTTCAGATACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATACTGGGTGAATACCCATTTCTCGGAGACACACTTCAAGATACATATGACAAAGTAAGAAATACATTAACTTCTTGCCCCAAATCTGAGCATGTTGTTTTCTTCCTTGTTCAGATAGTCAATAATCCTATAGAACTCCCAGATGACATTAACCCGCAGTTAAAGAATTTAATAGAAGGGTTACTTTGCAAAGACCCAAAACTAAGGATGACATTGGGTGAGGTTGCGGAGCATAGTTGGGTTATTGGAAATGATGGGCCAATTGGTGAGTACTTGTGTTGGTGCAAACGCAAGAGCCTGCAGAGGGAAGACTTTGATGAGAGCAATCTGCTTTCATGA 1299 0.4134 MIMGDYQSFSFSRMMGCFSCFGLIKKQKRRRTKRGINNFLSHGLLTDGETEGDEVSYSGEATSNTTSGDDNEVQILPNRSEEILTFRAENGMICRPFPVKETCKLVRSEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDEKHYAIKAFHKSHLQKLRVAPSETAMTDVLREVMIMKMLEHPNIVNLIEVIDDPESDDFYMVLEYVEGKWVCEGSGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGKVKIGDFSVSQAVEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKVRNTLTSCPKSEHVVFFLVQIVNNPIELPDDINPQLKNLIEGLLCKDPKLRMTLGEVAEHSWVIGNDGPIGEYLCWCKRKSLQREDFDESNLLS. 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08990 432 MobiDBLite consensus disorder prediction 56 70 - -
Seca3g08990 432 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 71 404 - -
Seca3g08990 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Seca3g08990 432 FunFam Serine/threonine-protein kinase GRIK1 isoform A 219 408 - -
Seca3g08990 432 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Seca3g08990 432 CDD STKc_LKB1_CaMKK 126 401 - -
Seca3g08990 432 SUPERFAMILY Protein kinase-like (PK-like) 115 413 IPR011009 -
Seca3g08990 432 Gene3D Phosphorylase Kinase; domain 1 114 217 - -
Seca3g08990 432 MobiDBLite consensus disorder prediction 49 70 - -
Seca3g08990 432 ProSiteProfiles Protein kinase domain profile. 120 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08990 432 Gene3D Transferase(Phosphotransferase) domain 1 219 407 - -
Seca3g08990 432 FunFam Serine/threonine-protein kinase Ssp1 114 216 - -
Seca3g08990 432 Pfam Protein kinase domain 122 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08990 432 SMART serkin_6 120 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08990 Seca-Chr3 227301669 227308106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08990 126 390 CBL-interacting serine-threonine protein kinases AT5G35410 34.457 1.78e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Seca3g08990 Pkinase 7.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08990 K00908 - gmx:100776013 723.391