Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08985 ATGTCTGAAGAAGCACTTTCTGCTGTTCCTTCCAAGCTCTTAGTTCAACCTCATGATCACCCAAACTCATCAAACCCTAACCCTAATTCAAATTCAGTTAAGAGAAAAAGAAGTCTACCCGGAACACCAGATCCAGATGCGGAAGTGATTGCTCTGTCACCAAAGTCACTGATGGCAACGAACCGTTTCGTGTGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAACTGCATCGGCGTGGCCACAATCTCCCATGGAAGCTTCGGCAGAGAACGAACCAAGAGGTGAAGAAGAAGGTTTATGTGTGTCCAGAGAAGAGCTGCGTGCACCATGACCCTTGCAGAGCACTGGGAGACCTCACAGGGATTAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCTAAGAAATACGCAGTTCAATCTGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAGATGTGACTGTGGCACACTATTCTCCAGGAAGGATAGCTTCTTAACGCATAGAGCCTTTTGTGATGCCTTGGCGGAAAGAAGTGCAAGACTAACTTCAATTCCATTAGTTTTATCTAACTTTGGGAATGATCCTTTGATGATGAACGCTCAAGCAGTACCCAGAAATATCTCCCAGAGTTTATTTGGGTTTCAGCATGAATTGGATGGGTCAGGCCCAGAATCATTCATGGGGAATTTTGTTGACTATGGGCAGAAGAGGGTGTCACAATGGAATAATAATCCTCAGCTTCATCAAGTATTAATCTCAAACTCTTCTTGCACCACCTTGCCTGATTTAGTCCAAACAACTAACAACAACAACAGCATGTTTGGGTCATCACCAGAAGCAGCACAGTGGGTGAATTGCCGATACCCAGAAGCATCATCATTTACAACATTGCCACATGGACTGAAGATAGAGCCAGAAGAAAACAAAGGGGACTTGTCACATAGTGTAAGCTCTTTGTATTCTAGTGATCAGAATCAGAACACAACTCATCACATGTCAGCTACTGCATTGCTGCATAAAGCAGCTCAAATGGAATCTGGGAGGATCAATGGAAATACTACTTTCAACAATAATAATAATGTGTTTGGCTTGCTGAGCTCTAATCTCTCAAGCAACAACAACAGGAATAGTACTAGTATTGGGGAAATTCAGAAGTTTTTCAAGGAGGAAAATCAAGGTGAAAACTTGAACTACATTAACCAGTCAATTATGGATATGGAGAAGCAAGTATATTCAGGTTCAAATAGTGAAGACCAACTCAGCTTAACAAGAGATTTTCTTGGAGTTGGAGATGACAGCTCATTGAACAGGCCTTTCTTGCAGCAAGAGTTTTCTGCCAAGTTCAATCCAATGGAACAGGTTGATGTCATGAACCTGCAAGGCCAGTTCAGTGGACATTACTGA 1452 0.4311 MSEEALSAVPSKLLVQPHDHPNSSNPNPNSNSVKRKRSLPGTPDPDAEVIALSPKSLMATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTNQEVKKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFLTHRAFCDALAERSARLTSIPLVLSNFGNDPLMMNAQAVPRNISQSLFGFQHELDGSGPESFMGNFVDYGQKRVSQWNNNPQLHQVLISNSSCTTLPDLVQTTNNNNSMFGSSPEAAQWVNCRYPEASSFTTLPHGLKIEPEENKGDLSHSVSSLYSSDQNQNTTHHMSATALLHKAAQMESGRINGNTTFNNNNNVFGLLSSNLSSNNNRNSTSIGEIQKFFKEENQGENLNYINQSIMDMEKQVYSGSNSEDQLSLTRDFLGVGDDSSLNRPFLQQEFSAKFNPMEQVDVMNLQGQFSGHY. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08985 483 MobiDBLite consensus disorder prediction 1 47 - -
Seca3g08985 483 Gene3D Classic Zinc Finger 115 196 - -
Seca3g08985 483 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Seca3g08985 483 MobiDBLite consensus disorder prediction 320 344 - -
Seca3g08985 483 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Seca3g08985 483 Gene3D Classic Zinc Finger 42 114 - -
Seca3g08985 483 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 457 IPR031140 -
Seca3g08985 483 MobiDBLite consensus disorder prediction 328 344 - -
Seca3g08985 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Seca3g08985 483 SMART c2h2final6 63 85 IPR013087 -
Seca3g08985 483 SMART c2h2final6 139 159 IPR013087 -
Seca3g08985 483 SMART c2h2final6 104 134 IPR013087 -
Seca3g08985 483 MobiDBLite consensus disorder prediction 17 37 - -
Seca3g08985 483 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
Seca3g08985 483 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Seca3g08985 483 FunFam protein indeterminate-domain 12-like 42 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08985 Seca-Chr3 227179326 227181541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08985 33 446 IDZ Gene Family AT3G45260 49.650 1.71e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g08985 zf-C2H2 0.0073 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08985 K25870 - gmx:100781896 454.907