Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08982 ATGTCCGTCATCGACATTCTCTTCCGCGTCGACGCCATATGCCACAAATATGACAAATACGACATTGATAAACAACGCCAGGACAACGCCTATGGCGATGACGCCTTCGCTCGTCTCTACGCTGCAGTTGAATCCAGCATTCAAGAATCTCTCAATAAATCTGAGCTTGCTTCCACTGAGAAGAACAGGGCAGTTGCTGCGGCTTTGAATGCAGAGGTTCGTCGAACCAAAGGTAGATTGATGGACGAAGTTCCTAAACTGCGCAAACTGGTGAATAAGAAGGTTAAAGGTCTCACAAATGAAGATATAGCCATTCGTCATGATCTTGTTCTGGCATTGCCAGAAAGAATCCAAGCAATACCAGATGGTATTACTGGAGCATCTAATCATACTGGGGGATGGGCAGCTACCTCATCCAATCCTCAAATCAAGTTTGATTCATCAGGAAATCTTGACAGTGAATATTTCCAGCAAAGTGAAGAATCCAGTCAGTTTAGACAAGAGTATGAAATGCGCAAGATGAAACAGTTTTCATTTGTACAGGATGAAGGGCTTGATATCATATCAGAGGGATTGGATACCCTGAAGGATATGGCTCATGATATGAATGAGGAATTAGATCGGCAAGTTCCTTTAATGGATGAAATTGACACAAAGGTGGATAGGGCAACAGCTGATGTGAAAAACACTAACCTAAGGCTGAAGAAAACTCTCACCGAGCTGAGGTCTAGTCGAAATTTCTGCATTGACATCATTCTTCTGTGTGTTCTTCTGGGAATCCTTGCCTATTTATACAATGCACTGAGGTGA 810 0.4296 MSVIDILFRVDAICHKYDKYDIDKQRQDNAYGDDAFARLYAAVESSIQESLNKSELASTEKNRAVAAALNAEVRRTKGRLMDEVPKLRKLVNKKVKGLTNEDIAIRHDLVLALPERIQAIPDGITGASNHTGGWAATSSNPQIKFDSSGNLDSEYFQQSEESSQFRQEYEMRKMKQFSFVQDEGLDIISEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDRATADVKNTNLRLKKTLTELRSSRNFCIDIILLCVLLGILAYLYNALR. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08982 269 Gene3D - 170 236 - -
Seca3g08982 269 SUPERFAMILY SNARE fusion complex 175 236 - -
Seca3g08982 269 FunFam Putative syntaxin-71-like 170 236 - -
Seca3g08982 269 SMART tSNARE_6 170 237 IPR000727 -
Seca3g08982 269 PANTHER SYNTAXIN 45 256 IPR045242 -
Seca3g08982 269 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca3g08982 269 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 237 IPR000727 -
Seca3g08982 269 CDD SNARE_Qc 181 236 - -
Seca3g08982 269 Pfam SNARE domain 212 261 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08982 Seca-Chr3 227125029 227128962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08982 1 269 SNARE and Associated Proteins AT3G09740 67.897 1.29e-137 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08982 K08506 - gmx:100817729 432.95