Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08972 ATGGAAATTGATCTGAATGATGCAGTGACTGAGGTTGAGAAGAATGCAACTTGCAATGGGGATTGTCACAAAGGTGCTTGTGTTTGCTGTTTGTCCTCTCCAACTTGTTCCTCTTCAGCTCGTGTCTCTTCTTCTTATCTTGAGCTCTGGCATGCTTGTGCTGGCCCTCTTACCAACCTTCCAAAGAAAGGGAATGTGGTGGTCTATTTTCCACAAGGACACTTAGAACAAGCTGCATCTTTCTCTCCCTTCTCTCCATTGGAGATGCCCACCTATGATCTTCAGCCACAGATCTTTTGCAGGGTTGTTAATGTCCAGCTACTTGCTAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCAGAGTTAGCAGGGATATATTTGGAGGGCAAAGAGATTGAGGGATTGGGAGATGATGAAGAGGGAAATGGAAAAACAGCTACAAAATCAACCCCTCACATGTTTTGCAAAACTCTTACTGCCTCTGATACTAGCACTCATGGGGGGTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGCCATATTTACAGAGGTCAACCAAGGCGGCATCTGCTTACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGGCCAAGAAATGGTCTTCCTGAGTCAATTGTTGGTAACCAGAGTTGTTATCCCAATTTCCTTTCTTCTGTGGCTAATGCTATATCTGCGAAAAGCATGTTTCATGTTTTCTACAGCCCAAGAGCAAGTCATGCAGATTTTGTCATACCCTACCAAAAATTTGTCAAAAGCATCAAGAATCCAGTGACCATCGGGACAAGATTTAAAATGAAATTTGAGATGGATGAATCTCCAGAAAGAAGGTGTAGTGGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATATTGAGATCAATCATCAAGATAGAGCATCTCCATGGGAGATTGATCCTTCTGCTTCTCTCCCTCCCTTGAGCATTCAATCTTCCCGGAGGCTGAAGAAACTGCGGACAGGTCTGCAAGCTGAATCACCCAGTCACCTCATCACTGGAGGCAATGGGTTTATGGACTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAAGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGATATCAGAACTCCAAGTCATCCTAATCTTGCATCAACTGGAGCAAGAAAGATTACTGCTGCTGAGCTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTCACGGAAACTAACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGGTCCCTGACAGGAGGAAAGGTTGACTTGAACCTTAGTGCTTGGGGCAAACCCAATATCAGTTGCACAAATTACAACCTGCATCAGGCAACCAAGCCAAGCTTTCACTCTTTAGGACCAGAAGTTCTTCAAAGTGCCTATTTTCCCTATGGTGATATTCACAAAGCTGGTCAAGGTAGCAGCATGTTGTGCTCTAAACCCACCAATTTCCAACTAGAGAATGTGCCATTTAACACACCTTCCACTCAGTCAGGGATCATGAGAAGTGAAGTTGGACTGTCAGGTCTCACAATCCCAAATGAGCAGAAGCTGCAGGACAACATTTCTGGTGCTGCTTCTTTAGGGGCAAACATGAGGATTCCAAATGATGACAATTTCAAGGGAAAGGCTAATGCTTGTAAACTATTTGGATTTTCCTTGTCTGGTGAAACTACCACCCAAAATTTACAGAACTCTACTAAAAGAAGTTGCACAAAGGTGAGCGATGATAGCAACAGAGTTATATTATGA 2061 0.4347 MEIDLNDAVTEVEKNATCNGDCHKGACVCCLSSPTCSSSARVSSSYLELWHACAGPLTNLPKKGNVVVYFPQGHLEQAASFSPFSPLEMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGIYLEGKEIEGLGDDEEGNGKTATKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNQSCYPNFLSSVANAISAKSMFHVFYSPRASHADFVIPYQKFVKSIKNPVTIGTRFKMKFEMDESPERRCSGGIVTGMSDLDPYKWPKSKWRCLMVRWDEDIEINHQDRASPWEIDPSASLPPLSIQSSRRLKKLRTGLQAESPSHLITGGNGFMDFEESVRSPKVLQGQENTSFMSLYYGCDTVTKQPEFDIRTPSHPNLASTGARKITAAELMRVHPSSYAGFTETNRFPRVLQGQEICPLRSLTGGKVDLNLSAWGKPNISCTNYNLHQATKPSFHSLGPEVLQSAYFPYGDIHKAGQGSSMLCSKPTNFQLENVPFNTPSTQSGIMRSEVGLSGLTIPNEQKLQDNISGAASLGANMRIPNDDNFKGKANACKLFGFSLSGETTTQNLQNSTKRSCTKVSDDSNRVIL. 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08972 686 Gene3D - 324 396 - -
Seca3g08972 686 Gene3D - 158 262 IPR015300 -
Seca3g08972 686 SUPERFAMILY DNA-binding pseudobarrel domain 153 271 IPR015300 -
Seca3g08972 686 FunFam Auxin response factor 323 396 - -
Seca3g08972 686 SMART B3_2 160 262 IPR003340 GO:0003677
Seca3g08972 686 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 45 672 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca3g08972 686 CDD B3_DNA 158 260 IPR003340 GO:0003677
Seca3g08972 686 Pfam B3 DNA binding domain 160 261 IPR003340 GO:0003677
Seca3g08972 686 ProSiteProfiles B3 DNA-binding domain profile. 160 262 IPR003340 GO:0003677
Seca3g08972 686 FunFam Auxin response factor 158 262 - -
Seca3g08972 686 Pfam Auxin response factor 286 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08972 Seca-Chr3 227004589 227010752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08972 42 684 B3 DNA Binding Superfamily AT5G60450 57.627 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca3g08972 B3 1.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08972 - - gmx:100812909 1207.97