Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08962 ATGCTGCGTTACTCCAATAATTCCTTCAACAACTTAGTCCCATCAACGGACTCGATGGCCGTTGAGAGGGTCTCTGATTCAGAGTCATACCTTGCTCGGTTCAATGAATTTCTCGCAGCCACGTTGAATGATGTAGCACAAGAAGCTCTGAATTCTCCTTCTGATAAGAAATTCGCTACAAAAGAAGCAAATTTCACGAGCTCCATGACGCTCTACACCCTGGTGCAGTGCACACCCGATTTATCCACATTTGAGTGTAACACGTGCTTCAGAAGCGCCATAGGTGACCTTCCAGCATGCTGTGATGGGAAACGAAGTGCAAGGTCCCTGCTTCCGGGTTGTAATGTTAGATATGAATTGTACCCGTTTTACAATGTCTCAATTCAACCTCAGTTCCCCTCTCCTTCTTCGGGAAAAAGCAGTATCTCTGTAATTGTTGTGGTTGTTGTCCCAATTGTTGTTGCCATGGTACTTTTCATTCTCGGTTTATGCTTCCTGCGTAAGAGGGCAAGCGACAAGTATAATACATTCAACCAGGATTCAAGTAATCTCTCTTTTAACTTCATAGCGATTGCTTCTGTTAATCTCATTGAGGAGGATTTTACAGATGTGGATGCTTTGCAATTTGACTTGGCTACAGTTGAAGCTGCCACTAACCGCTTCTCGGATGAGAACAAGATTGGCCAAGGTGGATTTGGTGCAGTTTATAAGGGTATCCTCCCTAGCGGACAGAGGATAGCCGTGAAGAGATTGTCAGTAAACTCCTTGCAGGGTACAGTAGAGTTCAGGAATGAAGCTACCCTTATGACCAAGCTTCATCATAGAAATTTAGTGAGGCTATTGGGATTTTACTTGGAGGGGCAGGAGAAGATGCTTGTCTATGAATACATACCAAACAAAAGCCTTGATCACTTTCTATTTGATCCTGTAAAGCAAAGAGAGTTAGATTGGTCAAGACGCTACAAGATTATAGTTGGCATTACTCGAGGAATTCTTTATCTTCATGAAGATTCCCAGCTTACAATTATACATCGTGATCTCAAAGCTAGCAATGTTCTATTAGATGAAAATATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAGGCAGATCAGACTCAAATAAATACAAGAAGGATAGTTGGGACTTATGGTTACATGTCTCCAGAATATGCAACGCGTGGACAGTACTCTGTGAAATCAGATGTATTCAGCTTTGGTGTCCTAGTTTTGGAGATTGTGAGTGGCAAGAAGAATGCTAATTTTCATCAATCGAATCATACTGGTGACCTCTTAAGCTATGCTTGGAAAAATTGGACAGAGCAAACACCTTTGGAATTGCTGGATCCAACACTTAGAGGTTCTTATTCAAGAAATGAAGTAATCAGATGCATCCACATAGGTTTATTGTGTGTTCAGGAAAATCCATCTTACAGGCCTTCTATGGCAACTATTGCACTTATGCTGAACAGTTATTCAGTTACCTTGTCATTACCACGACAGCCAGCATCTTTCCTGCATGGAAGAACACCTAACAGCCTAACAGGCTAA 1560 0.4173 MLRYSNNSFNNLVPSTDSMAVERVSDSESYLARFNEFLAATLNDVAQEALNSPSDKKFATKEANFTSSMTLYTLVQCTPDLSTFECNTCFRSAIGDLPACCDGKRSARSLLPGCNVRYELYPFYNVSIQPQFPSPSSGKSSISVIVVVVVPIVVAMVLFILGLCFLRKRASDKYNTFNQDSSNLSFNFIAIASVNLIEEDFTDVDALQFDLATVEAATNRFSDENKIGQGGFGAVYKGILPSGQRIAVKRLSVNSLQGTVEFRNEATLMTKLHHRNLVRLLGFYLEGQEKMLVYEYIPNKSLDHFLFDPVKQRELDWSRRYKIIVGITRGILYLHEDSQLTIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQINTRRIVGTYGYMSPEYATRGQYSVKSDVFSFGVLVLEIVSGKKNANFHQSNHTGDLLSYAWKNWTEQTPLELLDPTLRGSYSRNEVIRCIHIGLLCVQENPSYRPSMATIALMLNSYSVTLSLPRQPASFLHGRTPNSLTG. 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08962 519 SUPERFAMILY Protein kinase-like (PK-like) 208 508 IPR011009 -
Seca3g08962 519 ProSiteProfiles Protein kinase domain profile. 221 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08962 519 ProSitePatterns Protein kinases ATP-binding region signature. 227 249 IPR017441 GO:0005524
Seca3g08962 519 FunFam Cysteine-rich receptor-like protein kinase 10 185 296 - -
Seca3g08962 519 FunFam cysteine-rich receptor-like protein kinase 10 297 499 - -
Seca3g08962 519 ProSiteProfiles Gnk2-homologous domain profile. 16 123 IPR002902 -
Seca3g08962 519 FunFam Cysteine-rich receptor-like protein kinase 10 17 123 - -
Seca3g08962 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 342 354 IPR008271 GO:0004672|GO:0006468
Seca3g08962 519 Gene3D Phosphorylase Kinase; domain 1 183 296 - -
Seca3g08962 519 SMART serkin_6 221 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08962 519 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 508 - -
Seca3g08962 519 Gene3D - 18 123 IPR038408 -
Seca3g08962 519 Gene3D Transferase(Phosphotransferase) domain 1 297 501 - -
Seca3g08962 519 Pfam Salt stress response/antifungal 32 121 IPR002902 -
Seca3g08962 519 Pfam Protein tyrosine and serine/threonine kinase 224 489 IPR001245 GO:0004672|GO:0006468
Seca3g08962 519 CDD STKc_IRAK 227 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08962 Seca-Chr3 226855818 226868478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08962 1 516 Receptor kinase-like Gene Family AT4G05200 51.115 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g08962 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08962 - - gmx:547727 771.541