Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08960 ATGGAGAATGACACAAACACCCCTACTTCCTCTCCCCCATTTTCTCACTCTTCTACTACTCCTTCTCCATCTTCCCCTCCACAACCACAGGTTATCATGAGCCCCTGTGCTGCTTGCAAGATTTTGAGGCGAAGATGTGCAGAGAAATGTGTCTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCATTGCACACCGTGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAAAGAGCTGATGCAGTGAGCAGCATGGTTTATGAGGCTGGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGCCAGCTCCAAAAGCAGGTCAATGAGCTTCAAGCACAATTAGCAAAGGCACAAGCTGAGATTGTAAACATGCAATTGCAACAAGCCAATCTTGTGGCTCTAATTTGCATGGAAGTGGCAAAATCTCCACAGGAATCACCTCAACAGTCAGTGGACAACTTCATTTTAAGTCCTCCCCATAGCAGTAGTGGCTATCAAAACAGTCTTAACTTCTTTGAGGAGAACACCAGCCTAAACTCTTTGTGGGAGCCTCTTTGGACATGA 606 0.462 MENDTNTPTSSPPFSHSSTTPSPSSPPQPQVIMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEIVNMQLQQANLVALICMEVAKSPQESPQQSVDNFILSPPHSSSGYQNSLNFFEENTSLNSLWEPLWT. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08960 201 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Seca3g08960 201 MobiDBLite consensus disorder prediction 1 29 - -
Seca3g08960 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 161 - -
Seca3g08960 201 MobiDBLite consensus disorder prediction 1 18 - -
Seca3g08960 201 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Seca3g08960 201 Coils Coil 114 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08960 Seca-Chr3 226826375 226828643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08960 31 201 AS2 family AT2G28500 67.742 4.26e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g08960 LOB 2.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08960 - - gmx:100789504 314.309