Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08952 ATGTTAAATTTTGATGTCACAAAAAAATGTCTTGTTGGAGAGGGCTGGTGCCCTATGTTTGCAAAAACACAGATGCAGGAGGCACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGTATAATCTTCCATCCAATGGATGCAGTGGAATCACCTCCTACATATTTTAGGACCAATACTTTCACAAGTCCATATCAGGAAATTGTTGATGCATATGGTGTTGCAAGATACCAAGAAGCAAATCCTGCAGTTTATACAACTGTTATATTCCCCTTCCTATTTGCTTTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTAATTCTTATAGCACGTGAAAACAAACTCAGCACGCAGAAACTTGGAAGCTTTATGGAGATGCTATTTGGTGGACGCTATGTGATTCTTTTGATGGCACTATTTTCAATCTATTGTGGGTTAATCTACAATGAATTCTTTTCTGTTCCTTTTCACATATTTGGTGAGTCAGCTTATCGATGCCGCGATAATTCATGCAGGGATGCACATACTATTGGCTTAGTCAAAGTCCGAGATCCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGATCGGAATTGTCTTTTCTGAACTCTATGAAGATGAAGATGTCTATTCTGTTTGGTGTGGCACATATGAACTTGGGAATTATATTAAGTTATTTCAATGCTCGTTTCTTTGGAAGCTCACTGGATATAAGATACCAGTTTGTGCCACAGATGATTTTCCTTAACAGTCTATTTGGGTATCTTTCGCTTCTCATTGTTGTCAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTAATGATATATATGTTTTTAAGCCCCACAGACAATCTTGGAGAGAATCAGTTGTTCTGGGGCCAAAGACCACTTCAAATTGTGCTTTTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTCTGCTGAAGAAGCTTCATAGTGAGAGATTTCAAGGTCGTAGTTACGGTATTTTGAATACTTCTGAGATGGATCTTGAGGTAGAGCCGGATTCTGCCAGGCAACATCATCATCATGAAGAATTCAATTTCAGCGAGGTCTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACTGCGTCATATCTTCGACTTTGGGCATTAAGTTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTCTTGCCTGGGGGTATGACAACCTTGTTGTTCGGTTAGTGGGGCTCACTGTTTTTGCCTTTGCAACTGCCTTTATACTACTTATGATGGAGAGTCTTAGTGCTTTTCTTCATGCCCTGCGGCTTCACTGGGTAGAATTTCAAAATAAATTCTACCATGGTGATGGCCACAAGTTCAGGCCTTTTTCATTTGCTTCCTTAACAGAGGATGATGATTGA 1476 0.4051 MLNFDVTKKCLVGEGWCPMFAKTQMQEALQRATFDSNSQVGIIFHPMDAVESPPTYFRTNTFTSPYQEIVDAYGVARYQEANPAVYTTVIFPFLFALMFGDWGHGICLLLGALILIARENKLSTQKLGSFMEMLFGGRYVILLMALFSIYCGLIYNEFFSVPFHIFGESAYRCRDNSCRDAHTIGLVKVRDPYPFGVDPSWRGSRSELSFLNSMKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNSLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLAVIAVPWMLFPKPFLLKKLHSERFQGRSYGILNTSEMDLEVEPDSARQHHHHEEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVVRLVGLTVFAFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGHKFRPFSFASLTEDDD. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08952 491 PANTHER VACUOLAR PROTON ATPASES 1 490 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca3g08952 491 Pfam V-type ATPase 116kDa subunit family 1 483 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08952 Seca-Chr3 226567054 226578388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08952 1 484 Primary Pumps ATPases(2) AT2G28520 83.918 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08952 K02154 - gmx:100776037 912.524