Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08935 ATGGGTCTTTACTCTTTAGGCTTTTTCCATGTTTGGAGAAACATGTCTAAGATGCCTGTTTCAAAGAAAGGATTGGTAAAGGGTGTTTTCGTTATAGAGATTCCAATGCTTTCGTGCAGGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGAGAAGCAGTGACTAACTTTGAGCCAAGTACATATGAAAGCGAGATGAAACCAGAAGCTATTAATGAAGGTGGCAGTCACAATCTTGACCTCAATTTGGGTATGGCAACCCCAGGACACGGTCCCAACGAAAACAGGGGGCATCTTCAGTTCCTACCTGTCCTGCATCCTGGAAGAAGTTCAAGGATTTATGTCTTAATTAATGGTCATGATAGGGTTGGTTCACTTTATTTTCAGATGGAGACCAATGTTAATTCAGTTATTGGTGATCCGTCTTTGAAAAGGCTGGTTGCAACTGAAGAACGTCCTTCTGTATGGAATGCCACGTATTCCAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATCGGCTTAGATCCTTCAAAAGGACTCCGCAACTGGGCGTGGCAAACGCATGGGCAAGTCTCTGCAACCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCATCGACTGCGTCTGCCATATTTCCAACAAAGTCTATGAACTCAGGTCCTCAGAGCCTCTGTTTCACCTCATCCAGCGTACCTGGTAGCAATGCATCTCAATACTACTATCAGATGAAGTCCCCGCAGGCACCACCCTAG 831 0.4501 MGLYSLGFFHVWRNMSKMPVSKKGLVKGVFVIEIPMLSCRYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYESEMKPEAINEGGSHNLDLNLGMATPGHGPNENRGHLQFLPVLHPGRSSRIYVLINGHDRVGSLYFQMETNVNSVIGDPSLKRLVATEERPSVWNATYSSFFPNEERAERIGLDPSKGLRNWAWQTHGQVSATPVPPFSTAASSGFSISATFPSTASAIFPTKSMNSGPQSLCFTSSSVPGSNASQYYYQMKSPQAPP. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08935 276 CDD AP2 40 76 IPR001471 GO:0003700|GO:0006355
Seca3g08935 276 Gene3D AP2/ERF domain 9 75 IPR036955 GO:0003700|GO:0006355
Seca3g08935 276 ProSiteProfiles AP2/ERF domain profile. 11 74 IPR001471 GO:0003700|GO:0006355
Seca3g08935 276 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 102 - -
Seca3g08935 276 SMART rav1_2 21 80 IPR001471 GO:0003700|GO:0006355
Seca3g08935 276 SUPERFAMILY DNA-binding domain 34 75 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08935 Seca-Chr3 226247545 226250155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08935 36 100 AP2-EREBP Transcription Factor Family AT4G36920 61.765 6.02e-21 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08935 K09284 - gmx:100777102 361.688