Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08934 ATGTTAGATCTTAATCTGAATGCCGACTCGACTCAGAACGATGACTCGCTCGTGCCGGTGGATAAGTTTCCCGAAGTTTCTTCGGGAACCTCCAATTCCTCCATCGTGAATGCGGAGGGGTCAAGCAACGAGGACTCGTGCTCCACACGCGCCGGCGGCAACGTCTTCACCTTCAATTTCGGTATCCTTAAGGTGGAAGGAAGGAACGACGTCGTCGCGACCAAGGAGCTGTTCCCGGTGAGTGCCGGCAATTGGCAGGGGCAGCAGCCTTCGACGTCGTCGTTTCTGGCAAGGAAGAGCTTGGTGGATCTCTCGCTGGATCATCAAAACGGCGAGATGAAGGTGGTTCAGGTTCAGCCACAGCCACAGCCACAGCCACAGGTCAAGAAGAGCAGGAGGGGACCAAGGTCTCGGAGCTCTCAGTACCGAGGAGTCACCTTCTACAGGAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACCGCTCATGCCGCCGCTAGAGCCTATGATCGAGCTGCTATCAAGTTCAGGGGACTTGATGCTGACATCAATTTCAATCTCGTTGATTACGAGGAGGATCTGAAACAGATGAAGAATCTTTCCAAGGAGGAATTCGTGCACATACTACGTCGCCACAGTACCGGTTTCTCAAGGGGGAGCTCAAAATACAGGGGAGTGACACTTCACAAATGTGGCCGTTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTGA 771 0.5292 MLDLNLNADSTQNDDSLVPVDKFPEVSSGTSNSSIVNAEGSSNEDSCSTRAGGNVFTFNFGILKVEGRNDVVATKELFPVSAGNWQGQQPSTSSFLARKSLVDLSLDHQNGEMKVVQVQPQPQPQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08934 256 MobiDBLite consensus disorder prediction 1 17 - -
Seca3g08934 256 FunFam AP2-like ethylene-responsive transcription factor 140 199 - -
Seca3g08934 256 Gene3D AP2/ERF domain 140 199 IPR036955 GO:0003700|GO:0006355
Seca3g08934 256 SMART rav1_2 141 203 IPR001471 GO:0003700|GO:0006355
Seca3g08934 256 CDD AP2 141 196 IPR001471 GO:0003700|GO:0006355
Seca3g08934 256 MobiDBLite consensus disorder prediction 25 48 - -
Seca3g08934 256 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 100 256 - -
Seca3g08934 256 ProSiteProfiles AP2/ERF domain profile. 141 197 IPR001471 GO:0003700|GO:0006355
Seca3g08934 256 MobiDBLite consensus disorder prediction 116 130 - -
Seca3g08934 256 Pfam AP2 domain 141 189 IPR001471 GO:0003700|GO:0006355
Seca3g08934 256 MobiDBLite consensus disorder prediction 116 142 - -
Seca3g08934 256 MobiDBLite consensus disorder prediction 1 48 - -
Seca3g08934 256 SUPERFAMILY DNA-binding domain 140 197 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08934 Seca-Chr3 226245495 226247415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08934 1 256 AP2-EREBP Transcription Factor Family AT2G28550 66.187 9.54e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g08934 AP2 9.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08934 K09284 - gmx:100777102 418.698