Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08925 ATGAGTTGCTTTCCTTGCATAGGCAAATCACGAGAAAAAACGGATAGCAAACACCATAGCCATACCAAGAATCTCACTCCTGCTGGTAACGTCAAAGTTGATTTGAAGGTGAATGGTAAAAGAGAAGATAATTCTAAACGGGATCAGCTTTCTCTGGACGTGAAGAATTTGAATTTAAAAGAGGAGGCTTCTTCCAAGGATGGAAAAACTAACGGTTACCGAGCAAAGACATTTACTTTTGATGAGCTTGCAGTTGCAACAGGGAATTTTAGGTCAGATTGCTTTTTGGGTGAAGGAGGATTTGGCAAGGTCTATAAGGGTTACATAGAGAAAATTAATCAGGCTGTAGCAATAAAACAACTCAACCCTCATGGGCTTCAAGGAATTAGGGAATTTGTTGTTGAAGTGTTGACATTGAGTTTGGCAGACCATCCAAATCTGGTTAAGTTAATTGGGTTTTGTGCTGAGGGAGATCAGAGACTTTTGGTTTATGAGTACATGCCTTTGGGATCCTTGGAGAACCATTTGCATGGGGCTTATCTATTTTTTTTATTCTTCCTCCCCATTCTGTCAGATATTTTGCCTGGAAGAAAAGCACTGGATTGGAATACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGTTTGGAGTATTTGCATGATAAAATGAAGCCTCCTGTTATATACCGTGACCTCAAATGCTCCAACATTTTGTTAGGCGAGGATTACTTTCCAAAGTTATCTGATTTTGGCTTGGCAAAAGTAGGGCCTATTGGTGATAAGACCCATGTTTCAACTAGAGTTATGGGCACTTATGGGTATTGTGCTCCAGATTATGCAATGACGGGTCAATTGACATTCAAGTCTGATGTTTATAGCTTTGGGGTTGTTCTTTTGGAGTTAATTACAGGCAGAAAAGCCATCGACCATGCAAAACCTGCTAAAGAACAAAATTTAGTTTCTTGGGCAAGGCCCTTATTCAGAGACCGGAAAAGATTCCCACAGATGGTAGATCCATTGCTTGAAGGTCAATATCCAGTGAGAGGTTTATACCAAGCACTTGCTATTGCTGCTATGTGTGTTCAAGAGCAGCCTAATATGCGGCCTGTAATAGCTGACGTGGTTACAGCTCTAAGTTACCTTGCTAATCAGAAATATGATCCTCATATTCATCCAGTACAAAACTCTAGAAGATCTTCTCCAAGAGGTAAAGGTAAAGGTCATAGACGTATTGCTAGTAATGGATCTGAGTCAGACATATCTGGTGGAGGTAAAAGTGATGATCATAGATGTTCTGTTAGTAATGATTCTGAGTCAGACAGATCCTATGGAGATAAAAGCGATGGTCATAGACGTGTTTTTAGTATTGGTTCTGAGTCAGACTGA 1386 0.4026 MSCFPCIGKSREKTDSKHHSHTKNLTPAGNVKVDLKVNGKREDNSKRDQLSLDVKNLNLKEEASSKDGKTNGYRAKTFTFDELAVATGNFRSDCFLGEGGFGKVYKGYIEKINQAVAIKQLNPHGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHGAYLFFLFFLPILSDILPGRKALDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEDYFPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDVYSFGVVLLELITGRKAIDHAKPAKEQNLVSWARPLFRDRKRFPQMVDPLLEGQYPVRGLYQALAIAAMCVQEQPNMRPVIADVVTALSYLANQKYDPHIHPVQNSRRSSPRGKGKGHRRIASNGSESDISGGGKSDDHRCSVSNDSESDRSYGDKSDGHRRVFSIGSESD. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08925 461 MobiDBLite consensus disorder prediction 35 50 - -
Seca3g08925 461 Pfam Protein tyrosine and serine/threonine kinase 95 376 IPR001245 GO:0004672|GO:0006468
Seca3g08925 461 FunFam probable serine/threonine-protein kinase RLCKVII 61 166 - -
Seca3g08925 461 Gene3D Phosphorylase Kinase; domain 1 59 166 - -
Seca3g08925 461 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Seca3g08925 461 SMART serkin_6 90 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08925 461 CDD STKc_IRAK 96 378 - -
Seca3g08925 461 MobiDBLite consensus disorder prediction 389 461 - -
Seca3g08925 461 Gene3D Transferase(Phosphotransferase) domain 1 167 398 - -
Seca3g08925 461 ProSiteProfiles Protein kinase domain profile. 90 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08925 461 MobiDBLite consensus disorder prediction 422 461 - -
Seca3g08925 461 SUPERFAMILY Protein kinase-like (PK-like) 76 393 IPR011009 -
Seca3g08925 461 PANTHER OS07G0668900 PROTEIN 3 390 - -
Seca3g08925 461 FunFam Serine/threonine-protein kinase PBS1 167 396 - -
Seca3g08925 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Seca3g08925 461 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08925 Seca-Chr3 226012216 226016140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08925 1 381 Glycoside Hydrolase AT3G07070 54.545 9.52e-143 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca3g08925 PK_Tyr_Ser-Thr 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08925 - - gmx:100794680 656.751