Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08921 ATGGAGGAGCCAAAGAAATCATCACTGAGAACATCATTTCCCAGAGACCCTCGTGGGTCCCTTGAAGTGTTCAACCCAACAAGCTCCAACTCATCGGCGTTGCGCTCTCCTCAGCCTCTCTGGAAAACGTGGACAGAGTCAACGGAAGAACAACAACCACACAACAACCCTTCCTCCGATGAGGTCACCAACACCTCCTGGATGGCTCTCAAGGGGGAATGCGGCACGGCGGCGCAGAGAGCCGCCGAGTGGGGTTTAGTCCTCAAAACAGACACCGAGACCGGAAAGCCGCAAGGCGTGGCTGTTCGCAACTCCGGCGGCGAGGAACCGAACAATGCTAAACTCACCACCGCTTCTTCTTCTTCCAGAAGAAACTCCAACAACTCCGCCAGAACCTCCGGCGACTCTTCCGACGGCTCCGATTCCCGCGGGATTCCGAGAGTTTCAGAGGATTTGAAGGACGCTCTGTCTACGTTTCAACAAACTTTCGTCGTTGCGGATGCTACCAAACCCGATTACCCGATTATGTATGCCAGTGCCGGATTCTTCAAGATGACGGGTTATACATCCAAAGAAGTCATAGGGAGGAATTGTCGGTTTTTACAGGGTGCGGATACGGATCCGGAGGACGTGGCAAAGATAAGAGAAGCGTTGGGAGCAGGGAAAAGTTACTGTGGGAGGTTACTGAATTACAAAAAGGATGGGACATCCTTCTGGAACCTTCTAACTATTTCACCTATCAAAGACGACGATGGCAAAGTGCTCAAATTCATTGGAATGCAAGTGGAGGTTAGCAAGCATACGGAGGGGTCCAAGGAGAAGATGTTGCGCCCCAATGGATTGCCCGGATCCCTGATTCGATATGATGCTCGTCAGAAAGAGAAGGCTACAAATTCAGTAACTGAATTGGTACAGGCCGTGAAGCGTCCCCGAGCATTCAGTGAATCAGCAAACCCTCCCATGATTAGAGAATCAGGAGTTGTTGAAGAAGAAGAAGAAGAGAAAATATCAAGGAGAAAATCTGAGAGTGTGGCTTCCTTTAGACGGAAATCACAAGGAAGAAATAGAACTTCAATGGAGCGAATCAGTGAGCTGCCTGAAAATAAACAGAAAACCTCTAGTCGCCGTTCTTTCATGGGGTTCATCAGGAAAAATCAATCCATTGATGAAAGCGAAAATGAAGTTATTGAGGACGTCAGCTCTGAGAGTGAGGATGATGAGAGGCCTGATAGTTTTGAATTTGATGACAAAGAAAAACTGAGGGAAAAGAGAAAAGGTCTTGATCTTGCTACCACACTTGAGCGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCTGACAATCCTATAATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAATACAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCAGAAACTGTGAGAAAAATTAGGGTGGCAATTGACAACCAAACAGAAGTTACAGTGCAGCTTATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTACAATATTTTATTGGTGTCCAACTTGATGGTAGTCAACATATAGAGCCTCTTAACAACTGCATCGCTGAAGATACTGCAAAGGAGGGAGAACAATTGGTCAAACAAACTGCAGAAAATGTTGATGAGGCAGTGAGAGATCTTCCCGATGCTAATCTGAAACCAGATGATTTATGGAGAAATCATTCAAAAATGGTTCACCCCAAACCTCATAGGAAGAATGATGCTGCTTGGAGTGCTATCCAGAAGATCATAGAAAGCGGAGAACAGATAGGCCTAGAGCACTTTAGGCCAATCAAACCTTTGGGGTCAGGAGATACTGGCAGTGTGCATCTGGTAGAGCTAAGTGGGACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTACATAGAGCTTGCACAGAGAGAGAAATCCTTGACATGTTGGACCACCCTTTTCTGCCTGCATTATATGCTTCCTTTCAGACTACAACACATATTTGTTTGATAACCGATTACTGTCCTGGTGGAGAGCTATTCCTGATTCTTGACCGGCAGCCAGCAAAGGTTCTCAAGGAAGACGCCGTGAGATTTTACGCTGCTGAGGTAGTGATTGCATTGGAGTATCTTCATTGTCAAGGTGGGCTCTTATCCGCAACAACATGA 2262 0.458 MEEPKKSSLRTSFPRDPRGSLEVFNPTSSNSSALRSPQPLWKTWTESTEEQQPHNNPSSDEVTNTSWMALKGECGTAAQRAAEWGLVLKTDTETGKPQGVAVRNSGGEEPNNAKLTTASSSSRRNSNNSARTSGDSSDGSDSRGIPRVSEDLKDALSTFQQTFVVADATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALGAGKSYCGRLLNYKKDGTSFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGSKEKMLRPNGLPGSLIRYDARQKEKATNSVTELVQAVKRPRAFSESANPPMIRESGVVEEEEEEKISRRKSESVASFRRKSQGRNRTSMERISELPENKQKTSSRRSFMGFIRKNQSIDESENEVIEDVSSESEDDERPDSFEFDDKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPETVRKIRVAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHIEPLNNCIAEDTAKEGEQLVKQTAENVDEAVRDLPDANLKPDDLWRNHSKMVHPKPHRKNDAAWSAIQKIIESGEQIGLEHFRPIKPLGSGDTGSVHLVELSGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTTTHICLITDYCPGGELFLILDRQPAKVLKEDAVRFYAAEVVIALEYLHCQGGLLSATT. 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08921 753 ProSiteProfiles PAS repeat profile. 148 218 IPR000014 -
Seca3g08921 753 SMART pas_2 150 219 IPR000014 -
Seca3g08921 753 SMART pas_2 427 496 IPR000014 -
Seca3g08921 753 MobiDBLite consensus disorder prediction 89 147 - -
Seca3g08921 753 NCBIfam PAS domain S-box protein 450 540 IPR000014 -
Seca3g08921 753 NCBIfam PAS domain S-box protein 174 268 IPR000014 -
Seca3g08921 753 Gene3D PAS domain 414 578 - -
Seca3g08921 753 MobiDBLite consensus disorder prediction 389 413 - -
Seca3g08921 753 MobiDBLite consensus disorder prediction 392 411 - -
Seca3g08921 753 Pfam Protein kinase domain 628 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08921 753 MobiDBLite consensus disorder prediction 325 371 - -
Seca3g08921 753 Gene3D PAS domain 162 317 - -
Seca3g08921 753 SUPERFAMILY Protein kinase-like (PK-like) 607 746 IPR011009 -
Seca3g08921 753 MobiDBLite consensus disorder prediction 1 68 - -
Seca3g08921 753 SUPERFAMILY PYP-like sensor domain (PAS domain) 441 540 IPR035965 -
Seca3g08921 753 CDD PAS 440 540 IPR000014 -
Seca3g08921 753 MobiDBLite consensus disorder prediction 109 143 - -
Seca3g08921 753 SUPERFAMILY PYP-like sensor domain (PAS domain) 169 261 IPR035965 -
Seca3g08921 753 SMART pac_2 225 267 IPR001610 -
Seca3g08921 753 SMART pac_2 502 544 IPR001610 -
Seca3g08921 753 MobiDBLite consensus disorder prediction 311 377 - -
Seca3g08921 753 FunFam LOV domain-containing protein 414 578 - -
Seca3g08921 753 Gene3D Transferase(Phosphotransferase) domain 1 710 746 - -
Seca3g08921 753 ProSiteProfiles PAC domain profile. 499 553 IPR000700 -
Seca3g08921 753 Gene3D Phosphorylase Kinase; domain 1 624 709 - -
Seca3g08921 753 SMART serkin_6 626 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08921 753 CDD PAS 175 264 IPR000014 -
Seca3g08921 753 ProSiteProfiles Protein kinase domain profile. 626 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08921 753 FunFam LOV domain-containing protein 625 709 - -
Seca3g08921 753 PANTHER PROTEIN TWIN LOV 1 267 616 - -
Seca3g08921 753 ProSitePatterns Protein kinases ATP-binding region signature. 632 655 IPR017441 GO:0005524
Seca3g08921 753 MobiDBLite consensus disorder prediction 582 602 - -
Seca3g08921 753 MobiDBLite consensus disorder prediction 22 68 - -
Seca3g08921 753 Pfam PAS domain 448 540 IPR000014 -
Seca3g08921 753 Pfam PAS domain 169 265 IPR000014 -
Seca3g08921 753 ProSiteProfiles PAC domain profile. 222 276 IPR000700 -
Seca3g08921 753 FunFam Putative LOV domain-containing protein 162 318 - -
Seca3g08921 753 ProSiteProfiles PAS repeat profile. 425 498 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08921 Seca-Chr3 225963065 225976977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08921 2 746 AGC Kinase Gene Family AT3G45780 68.608 0.0 1036
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca3g08921 Pkinase 1.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08921 K20715 - gmx:100776796 1164.83