Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08913 ATGTATGCACACTCCAACACCGCATTCTCACGCGCCGCCACTGAATCATCCCTTTCCTTACCTTCCCCACTAATGCACCATCCCTTCCCCGACCTCACCGAGTTGGAGACTCTCTCTCAACTCAACAACTCGGAGGCAAGTTACAATAACAGCAACAGTTGTAGCAGCTACGGTGGATCACCTACTTCCATGGCAAGTCCCACCTTGATGCAGAGGAGCGTTAGCAGCCATTCCCTCCACATGAATAATAATAATAATAATAATGGGACCTACCACCCTCTGTCTGCTTTCTTTGCTGAGTTGCTCGACTCCGACGACGCTCCGGTCAGGAGAGTTTACAGTACTGGTGACCTGCAGAGGATTAATGGAATGCAACATAATCATCACTCGGATAGTCCATTGTCAAGCGAAAGTTGTATGATCATAGAAGGGATGGGCCGAGCCTGTCGATATAGCCCAGAAGAGAAGAAAGTGAGAATTGAGAGATATAGAAACAAGAGGAACCAGAGGAACTTCAACAAGAAAATTAAGTATGCTTGCAGGAAGACATTAGCAGACAGCAGGCCACGCATCAGAGGAAGGTTTGCAAGGAATGATGAAATTGACAAGAAGCCTACAGTTCAGTGGAGCCACATTGGTGCTGGTGAGGAAGAGGATGAGGAAGATGAGAATTGGATTAGTATCTTTGATTCCATTGTTGCTGCAAATCTTGCTCAAGAGTCTCAAGGCTGTTCCTCCTTTGATCTATTTTATTAG 756 0.4616 MYAHSNTAFSRAATESSLSLPSPLMHHPFPDLTELETLSQLNNSEASYNNSNSCSSYGGSPTSMASPTLMQRSVSSHSLHMNNNNNNNGTYHPLSAFFAELLDSDDAPVRRVYSTGDLQRINGMQHNHHSDSPLSSESCMIIEGMGRACRYSPEEKKVRIERYRNKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKKPTVQWSHIGAGEEEDEEDENWISIFDSIVAANLAQESQGCSSFDLFY. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08913 251 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g08913 251 ProSiteProfiles CCT domain profile. 156 198 IPR010402 GO:0005515
Seca3g08913 251 Pfam CCT motif 158 198 IPR010402 GO:0005515
Seca3g08913 251 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g08913 251 MobiDBLite consensus disorder prediction 46 67 - -
Seca3g08913 251 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 44 217 IPR045281 GO:0009909
Seca3g08913 251 ProSiteProfiles FAS1/BIgH3 domain profile. 1 98 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08913 Seca-Chr3 225811848 225814961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08913 152 204 C2C2-CO-like Transcription Factor Family AT5G15850 47.170 3.66e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g08913 CCT 1.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08913 - - gmx:102661609 315.849