Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08900 ATGGCGAGAATCAAGGTGTACGAGCTCAGGAATAAAACAAAAGCAGAGCTTCTGAATCAATTGAAGGATCTCAAAGCAGAACTTGCTCTCCTCCGCGTCGCTAGGGTCACTGGCGGAGCCCCAAACAAGCTTTCCAAAATAAAAGTGGTTAGGCTTTCGATAGCACAAGTGCTGACGATGATTTCCCAGAAGCAAAAGGCAGCACTGAGGGAGGCTTACAAGAATAAGAAGTACATGCCTTTGGATCTACGTCCCAAGAAAACCAGAGCTATCAGAAGACGCCTTACCAAGCACCAGGTATCCTTAAAGACAGAGCGTGAGAAGAAGAAGGAATTGTACTTTCCACTGAGAAAATATGCAGTTAAGGTGTAA 372 0.4516 MARIKVYELRNKTKAELLNQLKDLKAELALLRVARVTGGAPNKLSKIKVVRLSIAQVLTMISQKQKAALREAYKNKKYMPLDLRPKKTRAIRRRLTKHQVSLKTEREKKKELYFPLRKYAVKV. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08900 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Seca3g08900 123 Gene3D - 78 123 - -
Seca3g08900 123 FunFam 60S ribosomal protein L35 1 77 - -
Seca3g08900 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Seca3g08900 123 Coils Coil 7 34 - -
Seca3g08900 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Seca3g08900 123 NCBIfam 50S ribosomal protein L29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Seca3g08900 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Seca3g08900 123 FunFam 60S ribosomal protein L35 78 123 - -
Seca3g08900 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08900 Seca-Chr3 225307937 225309834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08900 1 123 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 85.366 1.32e-71 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08900 K02918 - gmx:100306624 228.024