Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08891 ATGGCTCCACCTAAAGCAGATAGTTCAAAGAAGGCTGATCCTAAGGCACAAGCCTTGAAAACTGCCAAAGCAGTTAAGTCAGGCCCTACCTTTAAGAAGAAGCCCAAGAAGATCCGAACATCTGTTACTTTCCATCGACCAAAGACTTTGAAAAAGGATAGGAGCCCCAAATACCCTCGTATTAGTGCTACACCAAGGAATAAGCTAGATCACTATCAGATTCTGAAATATCCTCTCACAACTGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTACGAGCTGACAAGAAGAAGATCAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTAAACACCTTGGTCAGACCTGATGGCACCAAGAAGGCCTATGTCAGGTTGACACCTGATTATGACGCCTTGGATGTAGCAAACAAGATTGGGATTATCTAA 465 0.4237 MAPPKADSSKKADPKAQALKTAKAVKSGPTFKKKPKKIRTSVTFHRPKTLKKDRSPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLVRPDGTKKAYVRLTPDYDALDVANKIGII. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08891 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca3g08891 154 FunFam 60S ribosomal protein L23a 32 154 - -
Seca3g08891 154 Gene3D - 35 154 IPR012677 -
Seca3g08891 154 Pfam Ribosomal protein L23, N-terminal domain 15 63 IPR005633 -
Seca3g08891 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca3g08891 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca3g08891 154 MobiDBLite consensus disorder prediction 1 39 - -
Seca3g08891 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 GO:0019843
Seca3g08891 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Seca3g08891 154 MobiDBLite consensus disorder prediction 44 63 - -
Seca3g08891 154 NCBIfam 50S ribosomal protein L23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08891 Seca-Chr3 225225808 225227638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08891 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 1.84e-70 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08891 K02893 - zju:107405105 264.233