Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08890 ATGTCTGATGAGGGATGGAATCAGGACGTAGTGGGATTAATTTTGGGATGCTGTTTTGTCTTCTTCCTTATACTGAGTCAATGCAAATGCAATATTGTCAAGCGTCTCTTGTGTGGGGTTACCAGTTCAAGTTCCCCTAGGGAATTTGTAGATGAGTCAATTCCTAATGATGATTCTCTACAGTTTCAAAGCAGTGATTTTGAGTTGTCGTCTGTAATAAATGCTCTTCCCGTGTATCAGTTTAAGAAAAATAAGGGAGAGGGAGAGGGAGAACAGATGCCAATTAACGAAGACTGTGCTATATGTTTGGGGGAATTTGAAGAAGGGGAATTGCTAAAACTTATTCCTAATTGTACCCATGGCTTCCACGTTTCTTGCATTGACATTTGGTTTCAGTTTCATTCAAATTGTCCTCTCTGCAGAACTTATGTCCGTTATGACCCCGTTGCTGAAGAGTGTTCAGTATCTTTTAACTCATTGCTAGAAACTCTGAGCATGGAAGAGTTTTCCCCAGACAGGACAGCACATTTCCAATCCATTCGTTCTCAAACCCTACAAAATTTGGAACATAGACGACAAGAGTCCAGTCCAGATTGCTAA 600 0.4067 MSDEGWNQDVVGLILGCCFVFFLILSQCKCNIVKRLLCGVTSSSSPREFVDESIPNDDSLQFQSSDFELSSVINALPVYQFKKNKGEGEGEQMPINEDCAICLGEFEEGELLKLIPNCTHGFHVSCIDIWFQFHSNCPLCRTYVRYDPVAEECSVSFNSLLETLSMEEFSPDRTAHFQSIRSQTLQNLEHRRQESSPDC. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08890 199 SMART ring_2 99 140 IPR001841 -
Seca3g08890 199 Pfam Ring finger domain 98 141 IPR001841 -
Seca3g08890 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 148 IPR013083 -
Seca3g08890 199 SUPERFAMILY RING/U-box 98 147 - -
Seca3g08890 199 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 144 IPR044675 -
Seca3g08890 199 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08890 Seca-Chr3 225223582 225224181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08890 71 144 C3H Transcription Factor Family AT1G04360 53.333 3.91e-22 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08890 - - aprc:113859782 166.007