Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08884 ATGACACCCCAAGAAGAACGCCTTGTGTTGGAACTTCAATCAAAATGGGGAAATAGATGGTCAAGGATTGCTCGCAAGTTACCTGGGCGCACAGATAATGAGATTAAGAATTATTGGAGAACTCACATGAGGAAGAAGGCTCAGAGCAAAAAGCAGGGAGGGTCTTCTAGTGGTCATTTCTCAGTATCCTCAAACAATCATGCAGTGGATTCACATGCTTCCAAAAAGGCTGGAGAAGAGAGTTTTTATGACACAGGAGGTCCTAACAAGGTAGCCTCAACCCACCAAGTTAAGGTGGGAAAAGGAGAAGATCATGAAGTTGAACAAGAGTTCTCTATGGATGATATATGGAAAGATATTGATCTGTCCTCAGAGGAGAACATTGATCTGCAGGCAGTGTATGATGGACACAGTGAAGAGGGTTGCAACTTTTCTTGTCCACAGATACCATCCCCATCCAGCTGGGAGTATTCTTCAGACCCTCTATGGGTGATGGATGAAGAAAGTGTGCTATTCCCTATGAGTGACCCATATTTTTCCTGCGATGCACAAGGCAGCAGTGCATTTCTAACCGGCTAA 579 0.4439 MTPQEERLVLELQSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQSKKQGGSSSGHFSVSSNNHAVDSHASKKAGEESFYDTGGPNKVASTHQVKVGKGEDHEVEQEFSMDDIWKDIDLSSEENIDLQAVYDGHSEEGCNFSCPQIPSPSSWEYSSDPLWVMDEESVLFPMSDPYFSCDAQGSSAFLTG. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08884 192 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
Seca3g08884 192 Gene3D - 2 77 - -
Seca3g08884 192 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Seca3g08884 192 MobiDBLite consensus disorder prediction 43 107 - -
Seca3g08884 192 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
Seca3g08884 192 SMART sant 1 45 IPR001005 -
Seca3g08884 192 CDD SANT 1 43 IPR001005 -
Seca3g08884 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Seca3g08884 192 MobiDBLite consensus disorder prediction 50 71 - -
Seca3g08884 192 FunFam MYB transcription factor 1 68 - -
Seca3g08884 192 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 89 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08884 Seca-Chr3 225133654 225135455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08884 1 168 MYB Transcription Factor Family AT3G46130 51.412 3.99e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g08884 Myb_DNA-binding 9.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08884 K09422 - gmx:100775900 268.085