Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08878 ATGAAGAGAGGCAGAGAAGAGGAGGGTGAGTTAGACGACATGGCTAATTGTTTAATGCTACTAACCAAAGTTGGCGAAAGTGGCAGTGAAACCAATTCTCCATCGAGGGAGAGAGAGTTGAAGGACAGTGTTTTTAAGTGCAAGACATGTAATAGACAGTTTTCTTCTTTTCAAGCCCTTGGGGGACACAGAGCCAGTCACAAAAAGCCCAAGCTCATGGTTTCGGATCTTTCCTGTCATCATCATCACTTATCAACGGGCTCGACCATGAAGCCCAGGATGCACCCATGCCCGATTTGTGGGCTTGAGTTCGCGATTGGACAAGCGCTGGGAGGGCACATGAGGAAACATAGAGGTGATATTAACGATGGTACTTTGCTGATTCGCAATAAGCATACCTTCCCCGTCTTGAAGAAATCGAAAGACGCTCATGAAAGGTTGAATTTGTGCTTGGACTTGAACTTGACGCCATCGGAGAATATTGATCTTAAGCTCAACCTTACCACGCCTGTTCTCAATTGTTTCATTTGA 531 0.4557 MKRGREEEGELDDMANCLMLLTKVGESGSETNSPSRERELKDSVFKCKTCNRQFSSFQALGGHRASHKKPKLMVSDLSCHHHHLSTGSTMKPRMHPCPICGLEFAIGQALGGHMRKHRGDINDGTLLIRNKHTFPVLKKSKDAHERLNLCLDLNLTPSENIDLKLNLTTPVLNCFI. 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08878 176 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Seca3g08878 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Seca3g08878 176 Gene3D Classic Zinc Finger 22 122 - -
Seca3g08878 176 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
Seca3g08878 176 SUPERFAMILY beta-beta-alpha zinc fingers 92 120 IPR036236 -
Seca3g08878 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Seca3g08878 176 Pfam C2H2-type zinc finger 44 70 - -
Seca3g08878 176 Pfam C2H2-type zinc finger 95 118 - -
Seca3g08878 176 PANTHER ZINC FINGER PROTEIN ZAT5 6 162 - -
Seca3g08878 176 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Seca3g08878 176 SMART c2h2final6 45 67 IPR013087 -
Seca3g08878 176 SMART c2h2final6 95 117 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08878 Seca-Chr3 225019152 225019682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08878 1 167 C2H2 Transcription Factor Family AT2G28710 48.214 1.32e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g08878 zf-C2H2_6 3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08878 - - gmx:100781211 238.81