Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08876 ATGTCTCAAAGAATCGGAACAAGGCTGTTCATCAGCAGACTGTCATTTTTCACTACAGAGGAGCACCTAAAGACGTTGTTCTCTCCTTTTGGAGTAGTTAAAGAAGCTAAACTTGTGGTGGACGCAAGAACCGAAAGGCCCAAAGGATTTGGCTTTGTTTCCTATGAGTCTGAGATTGAAGCAGAAAAAGCTGTGAAAGCCATGAATGGCAGGGTAATTTTGCCTTTATATCTATCATTCTGTGCAATAAAATTGAAAATATCCTTTTTTAAACAAAATACCAGGCACCATATTCAGTGTAGGAGCGTGAATGATAACCCATTCAACTTACTATTCTGCATTAGGTCCCCTGGTCTTCAAACGAAATCCTTTTGCTTTCTTATTGGTATGGTATGGCTGAATTTAACTTAA 411 0.3869 MSQRIGTRLFISRLSFFTTEEHLKTLFSPFGVVKEAKLVVDARTERPKGFGFVSYESEIEAEKAVKAMNGRVILPLYLSFCAIKLKISFFKQNTRHHIQCRSVNDNPFNLLFCIRSPGLQTKSFCFLIGMVWLNLT. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08876 136 Gene3D - 2 97 IPR012677 -
Seca3g08876 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 73 IPR000504 GO:0003723
Seca3g08876 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 92 IPR000504 GO:0003723
Seca3g08876 136 SMART rrm1_1 8 79 IPR000504 GO:0003723
Seca3g08876 136 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 72 - -
Seca3g08876 136 SUPERFAMILY RNA-binding domain, RBD 4 92 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08876 Seca-Chr3 224998102 225000753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08876 9 73 Eukaryotic Initiation Factors Gene Family AT1G22760 35.385 1.45e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08876 - K13195 pcin:129306862 117.087