Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08873 ATGTCTCAAAGAATCAATACAAAGCTGTTCATCAGCAGACTATCATTTTGCACTACAGAGGAGCACCTAAAGACATTGTTCTCTCCGTTTGGAGTAGTTACAGAAACTAAACTTGTGGTGGACCCAAGAACCGAAAGGCCCAAAGGGTTTGGCTTTGTTCCTATGAGTCTGAAATTGAAGCAGAAAAAGCTGTGA 195 0.4154 MSQRINTKLFISRLSFCTTEEHLKTLFSPFGVVTETKLVVDPRTERPKGFGFVPMSLKLKQKKL. 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08873 64 SUPERFAMILY RNA-binding domain, RBD 6 54 IPR035979 GO:0003676
Seca3g08873 64 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 53 IPR000504 GO:0003723
Seca3g08873 64 Gene3D - 5 54 IPR012677 -
Seca3g08873 64 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 64 IPR000504 GO:0003723
Seca3g08873 64 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08873 Seca-Chr3 224975763 224976158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08873 9 53 C2H2 Transcription Factor Family AT2G19380 42.222 3.62e-07 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08873 - K13195 cave:132163468 87.4261