Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08867 ATGGAGGAGAATCACTCTGCAGATGCAGGGAGTGGAATGAGAGGTTCACGATGGAACCCCACAAAAGAGCAAATAGGCATGTTGGAGAACCTGTTTAAGCAGGGAATTAGGAATCCAAATGCTGAGCAGATACAACATATTACCTCTAGTCTCAAAGCGTATGGTCACATCGAAGGGAAAAATGTCTTCTATTGGTTTCAGAATCACAAAGCCAGGCAAAGGCAGAAGCAGAAACAGATCAAGCAACAAAGAATTCCACATTTCAATCGCTATAATAATATTCATGCCTGCACCTCGCAACCTATTTTCTCTCCTCCACTGTGCCAAAATGACGTCCGTGTCCCACATTGCTTGCAAGTGCAACAGAATGGAATGAGCTTTTTGTATCCTCAACAACAAAAGGTGCTTGCCGCTAAGCAAGTTGTGTCCTTTGGGATGCCAAGATTGTGTGATGGCCCGCAGATATGTTCACAATTCCAACAGAATTATAACAACTTTGGCGACAGTAACCAGTGGCAGTTAGAGACGTTGACTCTCTTTCCTCTTCACCCTACTGGTATTTTGGAAGGAAAAACAACACACCAATTAGCGCCTTCAATTTCAGTTGATACATCTTCTGCTTCTCATGATATTGATGAAGATTGA 645 0.4279 MEENHSADAGSGMRGSRWNPTKEQIGMLENLFKQGIRNPNAEQIQHITSSLKAYGHIEGKNVFYWFQNHKARQRQKQKQIKQQRIPHFNRYNNIHACTSQPIFSPPLCQNDVRVPHCLQVQQNGMSFLYPQQQKVLAAKQVVSFGMPRLCDGPQICSQFQQNYNNFGDSNQWQLETLTLFPLHPTGILEGKTTHQLAPSISVDTSSASHDIDED. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08867 214 SUPERFAMILY Homeodomain-like 11 79 IPR009057 -
Seca3g08867 214 Gene3D - 1 90 - -
Seca3g08867 214 CDD homeodomain 14 71 IPR001356 GO:0003677
Seca3g08867 214 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g08867 214 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 4 203 IPR044555 GO:0003700|GO:0099402
Seca3g08867 214 FunFam WUSCHEL-related homeobox 4 15 82 - -
Seca3g08867 214 ProSiteProfiles 'Homeobox' domain profile. 11 76 IPR001356 GO:0003677
Seca3g08867 214 SMART HOX_1 13 80 IPR001356 GO:0003677
Seca3g08867 214 Pfam Homeodomain 14 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08867 Seca-Chr3 224891062 224892046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08867 16 119 Wox Gene Family AT5G59340 62.857 5.36e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca3g08867 Homeodomain 6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08867 - - pvu:PHAVU_011G064900g 185.267