Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08864 ATGGTTTTCTCTTCTATTCCATCCTATTTAGATCCTCCCAATTGGCACCAACAGCAACCAAATCAACATCACGCAAATGGCACTCATCCGTTGCTTCCACCGCTACCTGTTCCTCCACAGCATGCTCCTCACGGTGCAGGCTCAATCAGGCCCGGGCCGACACTAGATCAGTCTCAAGCCCAGGCCCAGGCCCAGGCTCAGCTAGCTAAGATAGCACCTTCTGAAGCAGCTTTAAAGTGTCCTCGTTGTGAATCCACCAACACTAAATTCTGCTACTTCAATAATTACAGCCTCTCTCAACCGCGGCACTTCTGCAAGACGTGTAGGCGTTATTGGACAAGAGGTGGTGCTCTCAGGAATGTTCCTGTTGGTGGAGGATGCCGTAGGAACAAGAAGAGCAAAAGGAGTAGCAGCAGTAACACTAGTACTCGCTCTGAATCTCCTCTATCTACTGATCATAACCACTCATCAGTACCTTCCAATTCCGTCACTAATAATGAGCTAATTCCAACAACTAATAACCGACCTTTCATGACCTCTCTCCAGAATCTGAGCCGTTATGGTGTGGGGAATATAGGCCTTAGTTTGCGTGAGATTCAAGCGCAGACTGGGCACGTGGGGTTTCAAACTGCAGAAGGAGGAGCGATGGATGAGTGGCGGTTTCAACAGATTCCTTTCTTGAACGGTTTTGAGTCAAGTTCAACTGTTTCATATCCGTTTCAACCGTCTGGTTTGGTTGGAGAGATAGCAGAAGCTTCTAGGGTTACTCAACTGCCATCTGTTAAATTGGAATACAATGGAGGAAGAGGAGGACTAAATTTATTGTCAAGATCTTCTCTGAACATAACGGAAAATAGTCATTACAATTCGTGGACAACGGATTTATCTGCTCTTGCCTCTTCTTCCGCTAGTCATCATCTCTTGTAA 927 0.4639 MVFSSIPSYLDPPNWHQQQPNQHHANGTHPLLPPLPVPPQHAPHGAGSIRPGPTLDQSQAQAQAQAQLAKIAPSEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKRSSSSNTSTRSESPLSTDHNHSSVPSNSVTNNELIPTTNNRPFMTSLQNLSRYGVGNIGLSLREIQAQTGHVGFQTAEGGAMDEWRFQQIPFLNGFESSSTVSYPFQPSGLVGEIAEASRVTQLPSVKLEYNGGRGGLNLLSRSSLNITENSHYNSWTTDLSALASSSASHHLL. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08864 308 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
Seca3g08864 308 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g08864 308 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Seca3g08864 308 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Seca3g08864 308 MobiDBLite consensus disorder prediction 122 174 - -
Seca3g08864 308 MobiDBLite consensus disorder prediction 136 174 - -
Seca3g08864 308 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 60 204 IPR045174 GO:0003700|GO:0006355
Seca3g08864 308 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08864 Seca-Chr3 224798219 224799613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08864 1 301 C2C2-Dof Transcription Factor Family AT2G37590 38.547 3.15e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca3g08864 zf-Dof 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08864 - - ccaj:109798892 310.071