Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08861 ATGATTAGCATAATTTATTTATATAGTTTGTGTAAGGATATATATCTGGTGATATTCTCGTGCACGAACCCACGGTTACTTTTCAACCTTGAACCATGGTTAGCTCGCTCTCCCTCTCCCTCAGCCGCGCCAATAGTCATTGCGCGTGTCTCTCTCTGTAATAAAAGCCTGTGTCTGAAATCTCTCTCGTTGACGACGAGTAATGACCAGCGATCCCGAGTTCCAGTGGTAGTGTTCAGTTCAGTTCGGGAAGCAAAACGGTGCGTGTCGTGGAGATCTGGTGAATTTCGTGGTAGCTCACGCGCGGCCATGGAGGTTGAGAAAGCAGATACAGTTGAGAGGTTGATTGAGTTAGTGAATGAGATATCGTCGATCTCGGATTACAGGTCGGCGGTGAAGAAAGATTACTGCAACTTGGCGCGTAGGTTGAAGCTGTTGACTCCATTGTTTGAAGAGATTAGGGACAGTAAAGAGCCAATCCCTGAGGAAACTTCAAAGGCCATGCTTTCCTTGAAGCAAGCTATGGAATCGGCTAAGCAACTTCTCAGATTCGGGAGTGAAGGCAGCAAGATTTACATGGTCCTGGAGAGGGACCAAGTTATGAACAAATTCCACGAGGTGACTGCTCAGTTGGAACAAGCATTGGGTGGAATTTCCTATGATAAACTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTTTTGCCCAGTTCAAAAGAGCCAAAGGAAGGGTTGATGCACCTGATGTTGAGTTGTATGAGGATCTCTCGTCTGTTTACAACAAGAGCAGTGATGCAGCTACAGATCCAGCTGTTTTACAGAGATTAGCTGAAAAATTGCAATTAATTGGAATAGCTGATCTTACACAGGAATCAGTAGCTTTGCATGAGATGGTGGCTGCCAGTAATGGGGATCCCGGGGCAAGCATTGAGAAGATGTCAATGCTATTGAAGAAGATAAAAGATTATGCCCAAACAGAAAATCTAAACATGGATGATAATGTAGAAGGAAACAGCCTTTCTTCAAGTTGCTGTAAACAAGGTGCAAATGATAAGAATCGCCAGTCCCCTGTAATCCCTGATGATTTTCGATGTCCAATTTCCCTAGAATTGATGAAGGATCCTGTCATTGTATCAACAGGACAGACTTATGAGCGTTCCTGTATAGAGAAGTGGTTGGAAGCAGGGCATTGGACATGCCCAAAAACACAGCAGAGCCTCTCTAGTACTGTTCTCACACCCAACTACGTCTTACGAAGCCTCATAACACAATGGTGTGAAGCCAATGGCATAGAACCACCAAAGCGACCCAGCAGTTCTCGACCTAGTAAATCAGCATCTGCCTGCTCACCAGCTGAGCAAAGTGAGATTGAGGATCTTCTTTGGAAACTCACATCTGGCAATCCTGAAGACCAGAGATCAGCTGCTGGTGAGATCCGCCTTCTTGCAAAGCGTAATGCAGATAACCGTGTGGCCATTGCTGAAGCTGGTGCAATACCTCTTCTTGTTGGTCTTCTCTGTATGCCTGACTCCCGCATTCAAGAGCATGCTGTTACTGCACTTCTGAATCTTTCCATATGTGAAAATAACAAAGGAAGTATCATATCTTCTGGGGCAGTTCCAGGTATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGGGAAAATGCAGCAGCAACTCTTTTTAGCCTTTCAGTTATAGATGAAAATAAGGTTACAATTGGTTCCTCAGGAGCCATACCACCATTGGTGATGCTGCTGAGCGAGGGTACTCAAAGGGGTAAGAAAGATGCTGCAACGGCACTCTTCAATTTGTGCATTTACCAGGGTAACAAGGGAAAGGCAGTGAGGGCTGGTGTTGTTCCCATACTGATGAGACTGCTGATGGAACCTGGTGGGGGAATGGTGGATGAAGCGTTAGCCATTTTGGCAATATTGGCTAGCCATCCTGATGGGAAAATTGCCATTGGCACTGCAGAGGCAGTGCCTGTTTTGGTAGAGGTTATTGGGAATGGATCTCCAAGGAACAAAGAGAACGCAGCTGCTGTCTTGGTGCACCTTTGTTCTGGAGATCAACAATATCTAGCTCAAGCTCGGGAGTTAGGAGTGATGGGTCCATTGTTGGAATTAGCTCAAAATGGCACTGACAGAGGCAAAAGAAAAGCTGCACAATTGCTTGAGCGAATGAACAGGTTCCTTGAACAGCAGGAGGAAGTTCAAACACAAACTGAACTTCAAGCTATGAACCTGGATACGCAACTGCCTTCTATTACTAACGTTAATGATAGCTGA 2301 0.4533 MISIIYLYSLCKDIYLVIFSCTNPRLLFNLEPWLARSPSPSAAPIVIARVSLCNKSLCLKSLSLTTSNDQRSRVPVVVFSSVREAKRCVSWRSGEFRGSSRAAMEVEKADTVERLIELVNEISSISDYRSAVKKDYCNLARRLKLLTPLFEEIRDSKEPIPEETSKAMLSLKQAMESAKQLLRFGSEGSKIYMVLERDQVMNKFHEVTAQLEQALGGISYDKLDISDEVKEQVELVFAQFKRAKGRVDAPDVELYEDLSSVYNKSSDAATDPAVLQRLAEKLQLIGIADLTQESVALHEMVAASNGDPGASIEKMSMLLKKIKDYAQTENLNMDDNVEGNSLSSSCCKQGANDKNRQSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHWTCPKTQQSLSSTVLTPNYVLRSLITQWCEANGIEPPKRPSSSRPSKSASACSPAEQSEIEDLLWKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLCMPDSRIQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVMLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPILMRLLMEPGGGMVDEALAILAILASHPDGKIAIGTAEAVPVLVEVIGNGSPRNKENAAAVLVHLCSGDQQYLAQARELGVMGPLLELAQNGTDRGKRKAAQLLERMNRFLEQQEEVQTQTELQAMNLDTQLPSITNVNDS. 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08861 766 FunFam RING-type E3 ubiquitin transferase 444 595 - -
Seca3g08861 766 Coils Coil 725 745 - -
Seca3g08861 766 Pfam Armadillo/beta-catenin-like repeat 488 527 IPR000225 GO:0005515
Seca3g08861 766 Pfam Armadillo/beta-catenin-like repeat 571 609 IPR000225 GO:0005515
Seca3g08861 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 434 IPR013083 -
Seca3g08861 766 PANTHER U BOX DOMAIN-CONTAINING 131 735 - -
Seca3g08861 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
Seca3g08861 766 FunFam RING-type E3 ubiquitin transferase 108 221 - -
Seca3g08861 766 Pfam U-box domain 361 431 IPR003613 GO:0004842|GO:0016567
Seca3g08861 766 SUPERFAMILY ARM repeat 459 738 IPR016024 -
Seca3g08861 766 CDD RING-Ubox_PUB 362 414 IPR045210 -
Seca3g08861 766 SMART Ubox_2 364 427 IPR003613 GO:0004842|GO:0016567
Seca3g08861 766 Gene3D - 105 220 IPR036537 GO:0007166
Seca3g08861 766 FunFam RING-type E3 ubiquitin transferase 361 434 - -
Seca3g08861 766 CDD MLKL_NTD 115 241 - -
Seca3g08861 766 FunFam RING-type E3 ubiquitin transferase 635 752 - -
Seca3g08861 766 ProSiteProfiles U-box domain profile. 360 434 IPR003613 GO:0004842|GO:0016567
Seca3g08861 766 SMART arm_5 652 692 IPR000225 GO:0005515
Seca3g08861 766 SMART arm_5 488 528 IPR000225 GO:0005515
Seca3g08861 766 SMART arm_5 529 569 IPR000225 GO:0005515
Seca3g08861 766 SMART arm_5 570 610 IPR000225 GO:0005515
Seca3g08861 766 SMART arm_5 611 651 IPR000225 GO:0005515
Seca3g08861 766 SMART arm_5 694 734 IPR000225 GO:0005515
Seca3g08861 766 Gene3D - 444 756 IPR011989 -
Seca3g08861 766 SUPERFAMILY RING/U-box 352 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08861 Seca-Chr3 224766650 224771970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08861 104 742 U-box Gene Family AT3G46510 71.674 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08861 - - pcin:129314694 1050.81