Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08853 ATGGAACTTTTGAACCCTTCCCACCCTCCTCACCCCCACCATGCACCACCACCCTCCTCGATTCTGCGCTTTCCCTTTCACGCGGTTCCCTCTTCTTCTCAATCTCAGATTCACTTACCCCAACCTATGGAACATTCTAACCGTAAGGTTCATGTAGCCGTTGGGAAATCGCTTGAGAAAGCCGTTTCCTTGCTTCGATGGACTTTCAACCAGTTTCCCAACACAGAAATTGTCATTATTCATGCCTATCAACCTTCTCAAATGATTCCCACTTTACTGGGGAAAATGCCAGCATCCCAGGCTAGTCCTGAAGTGGTGTCTGCTTTTCGAAGGGAGGAAAAAGAACAGACTATGAGGGTTGTAGACAAGTTCTTGAGCATTTGCCGCGCAGCTAGGGTTAAGGCAAGTAGTATTGTAACTGAAGCTGACCAAGTCCAAAAAGGAATTGTTGATATGGTTATTAGGCATAACATTAGGAACCTTGTAATTGGAGCAGCAACGGAAAATTGGATGAAAGTGAAAAAGAATTCCGGTAAAGCAAATTACACTGCCAAAAATTCCCCACCATTCTGTGAAATATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAGGCTTCTGAAGCACCATGTTCTTTGTCTTCATGTGCTCAACCTGGGATTGCATCCACGGAAAGTTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAATTACCCGACTCAGAATATCTTCAGCCAAATTCTGCAAGAACTACAATATGTTCTGGAATTAGAAGTTGGGCTCAGGGTGACATCATGGAAACTGAAGCCACTTTTTCATCCAAATCATCCAGTTGTGGCAGTCATTGCTCCCCCCAAAATTCTGCTGGGGGTTATTTAGATCCATATTTAGAGGGCATGGAAGAAAGAGTTAGCAGCCAACTTATTGAAACCAAAAGAGAAGTTGAGGCAGCAACAGATGAGGCCTTTGCAGAGCGATTAAAGTGCAAGAGGTTGGAAGTCAAAGCCATGGAGGCCATGAGGAAGGTCAGTTTGTTTGAATCTGCCCATGCACGTGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGCCACAGTACAAGAACAACAAAAGCTCTTGGATGAGAGTGAAGAAATTGCTGGTGAGCTACAAATGACCATGAGAAATATTGCCCTACTAGATAGTCATGCTCAGGAAGCAACCCGTAGGCAAGATGAAGCTGCAGATGAACTATCATTAATTCAAGCATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTTCGCTGGCTTGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGCAGCTCATTACAATGGGGTCATTGGGTTTGCTGAAGAATTACCTGAGTTAGCAGAATTTTCGTTATCAGATCTTCAAAATGCTACATGTAATTTTGCCAAGAGCTTTAAAATCGCCCAAGGTGGATATGGTTGTATATATAAGGGGGAAATGTTGGGTAGGACTGTTTCTATAAAAAAGTTCCATCAACATAATGTGCAAGGACCAGCAGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCATCCTCACTTATTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATACGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCCCCTTTGACATGGCATGCCCGAGCACGAATGATTGCTGAAATTGCTAGTGCACTCTGCTTCTTACATTCTTCTAAACCTGAAACTATTATCCATGGTGATCTGAAGCCTGAAACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGTGAATTCAGGTTCAGCAGGCTTGTGACAGAGGAGTCTCTCTATCGTCCTAGTTTCTACTTGAGCACTGAGCCAAAGGTTCCTTTCACATATACAGATCCAGAGTATCAGAGAACTGGAATACTAACACCCAAGTCTGACATCTACTCCTTTGGGCTCATTATTTTGCAACTTCTCACTGGTAGGACCCCAATTGGATTGGCAGTTCTAGTACGCAACGCAGTTTCATGTGGAAGTTTGTCTTCAATTCTTGATTCTTCAGCTGGAGAGTGGCCTTCAGATGTGGCAACACGATTGGTTGAACTGGGATTGCAATGCTGTCAACAAAATGGTAGAGACAGACCAGAGTTAACACCTTCTCTAGTGAGAGAATTGGAGCAGTTGCATGTTTCAGAAGAGCGACCTGTGCCTTCTTTTTACTTATGTCCAATCCTTCAGGAAATAATGCATGATCCCCAAGTTGCAGCAGACGGATTTACCTATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGACATGATACCTCTCCTATGACTAATTTAAAATTGAGTCACCTGCTTCTTACTCCCAACCACGCACTTAGACTTGCCATCCAAGACTGGCTTTGCAAAGGTTGA 2490 0.4345 MELLNPSHPPHPHHAPPPSSILRFPFHAVPSSSQSQIHLPQPMEHSNRKVHVAVGKSLEKAVSLLRWTFNQFPNTEIVIIHAYQPSQMIPTLLGKMPASQASPEVVSAFRREEKEQTMRVVDKFLSICRAARVKASSIVTEADQVQKGIVDMVIRHNIRNLVIGAATENWMKVKKNSGKANYTAKNSPPFCEIWFIYKGKHIWTREASEAPCSLSSCAQPGIASTESLRCRSFQYGKNELPDSEYLQPNSARTTICSGIRSWAQGDIMETEATFSSKSSSCGSHCSPQNSAGGYLDPYLEGMEERVSSQLIETKREVEAATDEAFAERLKCKRLEVKAMEAMRKVSLFESAHAREVKLRKEAEDALRATVQEQQKLLDESEEIAGELQMTMRNIALLDSHAQEATRRQDEAADELSLIQASISTLWQERQQIRRQKMEALRWLERWKSRGQVGAAHYNGVIGFAEELPELAEFSLSDLQNATCNFAKSFKIAQGGYGCIYKGEMLGRTVSIKKFHQHNVQGPAEFHQEVQVLGSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWHARARMIAEIASALCFLHSSKPETIIHGDLKPETILLDSSLSCKICEFRFSRLVTEESLYRPSFYLSTEPKVPFTYTDPEYQRTGILTPKSDIYSFGLIILQLLTGRTPIGLAVLVRNAVSCGSLSSILDSSAGEWPSDVATRLVELGLQCCQQNGRDRPELTPSLVRELEQLHVSEERPVPSFYLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLLLTPNHALRLAIQDWLCKG. 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08853 829 Coils Coil 359 379 - -
Seca3g08853 829 SUPERFAMILY RING/U-box 756 828 - -
Seca3g08853 829 CDD STK_N 49 199 - -
Seca3g08853 829 SUPERFAMILY Protein kinase-like (PK-like) 469 741 IPR011009 -
Seca3g08853 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 759 828 IPR013083 -
Seca3g08853 829 Gene3D Transferase(Phosphotransferase) domain 1 558 758 - -
Seca3g08853 829 Gene3D HUPs 43 167 IPR014729 -
Seca3g08853 829 Coils Coil 303 323 - -
Seca3g08853 829 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 51 168 - -
Seca3g08853 829 ProSiteProfiles Protein kinase domain profile. 485 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08853 829 ProSiteProfiles U-box domain profile. 758 829 IPR003613 GO:0004842|GO:0016567
Seca3g08853 829 Gene3D Phosphorylase Kinase; domain 1 462 557 - -
Seca3g08853 829 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g08853 829 PANTHER OS02G0152300 PROTEIN 50 823 - -
Seca3g08853 829 Pfam Protein tyrosine and serine/threonine kinase 490 741 IPR001245 GO:0004672|GO:0006468
Seca3g08853 829 Pfam U-box domain 759 828 IPR003613 GO:0004842|GO:0016567
Seca3g08853 829 CDD RING-Ubox_WDSUB1-like 760 815 - -
Seca3g08853 829 SMART Ubox_2 762 825 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08853 Seca-Chr3 224629838 224639375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08853 47 826 U-box Gene Family AT2G45910 36.273 1.33e-168 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca3g08853 PK_Tyr_Ser-Thr 7.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08853 - - gmx:100788846 1354.35