Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08836 ATGGAAGATGACGTGGACGAGAATTACAGTATCTTCCAAGATTCCTTGGCTCTCCAACATGCTGAGAAATCATTTTATGATGTTATTGGTGAGAACTACCTTCCTCCTCCCCCTCCCTCTTCCCTCCAGTATCTTCCTTACAGTTACCCCACAGTGGATAGCCCTGACCAAAGTCTCTCCAGTACTTACAGTGATTATAGTTTTAGCAGTGGCACTTCCACCAGTACTGCTGATTCTGCAGAGTACAACCCCAACCCCCTTATTCCTCCACCCAATTTTCCCATTCCTCCTACTAACTATGTTTTTAATTTTCAGTCCACCACAAATAATAGATCAGGGAATCCAATGGCTGGATTTCAAGATCCAACAATATTGCTTAGCGAGAGTGAGTTTCTTCAATTCAAGAGAGCCATGTTCCTCTCTAACCAATATCTCAGTCCATTCATTATTGACCCTGCTTACACAAACACAACCTTTTCCCCTTCTTTCAGAACGGTTCCTCAGGTGGTAATCAAGACAGAAGAAGAAGAATTTCATGAAGAGGATGTGTCACAAGGGAGCAAAATTCTCCACCATCAAGATCAAGATGAAGTAGAAGATGGGAGAAGCACTAGCATGGAAGGCAATGAGTTATCAGAATTGTTTGATAAGATTCTGCTGCTGGGAGCTACTCAGCAAACTGATGAATCAAGCACAAGTAGTTCTAGTGGTGGAAAGAGCCTTGTGAGGAGACAGAGCAATAGTGAGGAAGTTGTGGATTTGAGGACACTATTGCTGCTATGTGCACAAGCTATTTCTTCTAATGATCTTTCAACAGCTAACCAGTTGTTAAAGCAGATTAAGCAGCATTGTTCTAGAATGGGTGATGGGACTCAGAGATTGGCCTATTTCTTTGGGAATGCCCTTGAAGCACGCTTAGATGGCACTGGTCCAATGATTTATAGTGCTTTATCTTCTAAGAAAAACACTGCTGCTGATATGATAAAAGCTTACCAAGTGTATGCCTCAGCTTGCCCATTTGATAAGCTTGCAATCATTTTTGCAAACAATTCAATTTGGAACAAAGTCAAGGAAGTTGAAACTCTTCACATTATAGACTTTGGTGTTGGTTATGGCTTCAAATGGCCTGCCTTTATTAACCGTTTATCAAAAAGAGAAGGTGGGCCACCCAAGTTGCGCATCACAGGGATAGAGTTTCCACAACGTGGTTTAAGGATTCAGGAGACAGAGCATCGACTTGCAAGCTATTGCAATCGCTTCAATGTTCCATTTCAGTTCAATGCTATTGTAAAGAGATGGGAAACCATCCAAGTTGAGGACCTCAAAATAAAGGAAAATGAATTTGTGGCTGTCAATTGCTTGTTTCGCTTTGATAATCTACTTGATGAGACGGTTGTGATGGATGATCAAAGGGGTGCTGTTTTGAGTTTAATTAAGAAGGCAAATCCTGGCATATTTGTGCAGAGCATTGTTAATGGTTGCTATGATGCACCTTTCTTTGTCACACGGTTCAGAGAGGCTCTTTATCATTACTCAGCAATGTTTGACTTGCTTGACAACAATGTTGCTCGTGAAGATCCTATGAGGTTGATGGTGGAAGAGGAGTTTTGTGGAAGGGAGATAGTGAATATCATAGCTTGTGAAGGTTGTGACAGGGTTGAGAGGCCAGGGACATACAAGCAATGGCAGTATAGGAACATGAGAGGTGGGTTTAGGCAGCTTCCCATGGATTACCAAATTATTAACAAATTAAGGGATAGGTTGAGAAATGATGCTTACAACAGTAATTTCATGCTTGAAGTGGATGGAAATTGGATGCTACAAGGTTGGAAGGGTCGAATTCTATATGCTTCCTCATGTTGGGTACCAGAATAG 1875 0.416 MEDDVDENYSIFQDSLALQHAEKSFYDVIGENYLPPPPPSSLQYLPYSYPTVDSPDQSLSSTYSDYSFSSGTSTSTADSAEYNPNPLIPPPNFPIPPTNYVFNFQSTTNNRSGNPMAGFQDPTILLSESEFLQFKRAMFLSNQYLSPFIIDPAYTNTTFSPSFRTVPQVVIKTEEEEFHEEDVSQGSKILHHQDQDEVEDGRSTSMEGNELSELFDKILLLGATQQTDESSTSSSSGGKSLVRRQSNSEEVVDLRTLLLLCAQAISSNDLSTANQLLKQIKQHCSRMGDGTQRLAYFFGNALEARLDGTGPMIYSALSSKKNTAADMIKAYQVYASACPFDKLAIIFANNSIWNKVKEVETLHIIDFGVGYGFKWPAFINRLSKREGGPPKLRITGIEFPQRGLRIQETEHRLASYCNRFNVPFQFNAIVKRWETIQVEDLKIKENEFVAVNCLFRFDNLLDETVVMDDQRGAVLSLIKKANPGIFVQSIVNGCYDAPFFVTRFREALYHYSAMFDLLDNNVAREDPMRLMVEEEFCGREIVNIIACEGCDRVERPGTYKQWQYRNMRGGFRQLPMDYQIINKLRDRLRNDAYNSNFMLEVDGNWMLQGWKGRILYASSCWVPE. 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08836 624 Pfam GRAS domain family 254 621 IPR005202 -
Seca3g08836 624 MobiDBLite consensus disorder prediction 178 206 - -
Seca3g08836 624 ProSiteProfiles GRAS family profile. 245 622 IPR005202 -
Seca3g08836 624 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 212 617 IPR005202 -
Seca3g08836 624 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08836 Seca-Chr3 224238741 224240615 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08836 1 623 GRAS Transcription Factor Family AT1G07530 47.953 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g08836 GRAS 4.5e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08836 - - gmx:100793066 650.203