Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08835 ATGGAAAACATTAATGAAAACGTTGGTGAGAATGTTGTTGGGTTGGAAGAAATTGAAAGTGAAGATGATGGTGACAATGCATTTCATTACGACTCTCGTCAATTTGTAATTGGGGTGGATTCTGAGGCTGATTTTGTTGACCTTAATCCTGACTTGTTATCTGAGGAAAACTTGAAGAATTTCAATTTTCCTAATCTGGATGTTGCTTATAATTTTTACAATAATTGGTATGGAAAAATGAAGGGTTTTTCGGCACGAAAGGGCAAAGAACGTAAAAATGCAATGGAAGAAATTATTGAGAAGACGTATCTATGCCATAGGGAAGGAAAGAGACCAATTAATACAAATGAAAAGACGGGGAAGAAAAAACGTGAAGCAAAGCCTGAGACAAGGTGTTTATGTCCTGCAAAAATGAAGGTTCGGTTAGATGTACATTCTGGCCGTTGGAATGTGATCAAGTTTTGTGATGCCCATAATCATGAAATGTTAAACCCCAAATACACAGGGATGCTACCGGTTCATAGGAAATTGAGTGAAGCTGATATCTTGGAGATGAATAACATGCGGAATGCAGGTATTACTACACCTCAAATTTATGGGTCATTTGTCAGCCAATCTGGTGGGTACAACAATGTTGGTTTTCGGAAAAGAGATCTTTACAATGAGATTGGTAGGCAAAGAATGTTGCAGCTAAGTGATGATAAGGGTGCAATTAAGTACCTACGTGAAAGGGAGCAGAATGAAGGGTCAATGTTTTGGAGGCACACGACTGACTCTAAAGGCCGACTCCAACGATTATTTTGGTGTGACGGTCAGTGCCAACTTGATTACAAATTATTTGGTGATGTCCTTGCCTTTGATGCCACATATCGTAAGAACAAATACCATTTTCCTTTGGTTGTGTTTTCGGGCATAAATCACCATAATCAAAGTACAATATTTGCTAGTTGCCTAGTTGTAGATGAAATTGAGGAAACTTATGTGTGGGTTTTGGAACAGTTGATGGTGGCAATGAAAGGCAAGATGCCTTTAGCAGTGATAACAGATGGTGATCTTGCTATGCGGAATGCTATCAAAAGAGTGCTTCCAAATGCACACCACAGGCTTTGTGGATGGCACTTGTGTCGTAATGCTGCCAGTAATGTTAAAAATCCTAAGATGGTTTCGATGTTTAGGAAATGTATGTTGGGTGACTATGAGGTTTCTGAGTTTAAACACAGGTGGGAGGTAATGGTGAAGGAATTTCGACTTGAGGAAAACAATTGGGTGAAGGAAATGTATGAGAAAAAGAGGATGTGGGCCACAGCATACATAAGGGGAAATTTCTTTGCAGGGTTTAGGACAACGTCTCGATGCGAGGGGCTGCATGGGCAACTTGGAAAGTTTGTTCACTCCCGGACCGATTTGGTTGGCTTTCTGAAAAATTATGGCCGTTTCCTTGAAGTACTAGGGTATAATGAGTTAGAAGTTGATTTCGAGTCAGTACGCGGTGATATGGTCCTGGAGACTAACTTGCATGCACTAGAGAGATCAGCCTCTAAGATTTTCACAAAGGAGGTTTTCATATTGTTACGTCCCGCCCTTGCCAGGGGAAGCACTATCAGGGTCATGGGCTGTACACAGCTGATGTCACAAACCATTTTTACAGTGTCTAAGTATGGTAGATCACAGAAGAGGTGGCAAGTGTCATATATTCCAGAACCACTTTTCATTAAATGTTCTTGTCAAAGAATGGAATCCTTTGGACTTCCATGTGATCACATAATTGGTGTGATGGTACACTTGAACATACAAGAGATGCCGAAGTGTCTTGTGCTGAGTAGGTGGACCATGGGTGTGAAGGATAGTGCTTATGATATTAGGGATGGACGTAACTCGATTTGGGATTCTGTGTATGATGCACGTTGTGGTTATTTGGACTTTTTGTGTAAGAAGATGAATAGATTAGGGGGTAGATCTGATACAAGATTCAATGAGATTAAGGACTGGGTTAGCAGTAAAATAAACTTGTATAGTGCATCACATATGAGTAGTGGTGATGGGAATGAAAATGCTACAGATGAAGGTGGTCCAACATTGAAAGATCCAATTAGAGTTGGTTCAAAGGGGTGTGCAGCTGGTTCATCGTCACAAGCAAGAAGACGACCCCATAAATGTAGGCAATGTGGTCTTGTTGGTCACAATCGAACTACTTGCCCAAATAAAAGGAAATATGAGGCTCCTCTTGAGTCGGGAGAGGTTAGTACTCTTTTGTGTAATTTTTTGTTAAGTTATTTGATTTAA 2283 0.4039 MENINENVGENVVGLEEIESEDDGDNAFHYDSRQFVIGVDSEADFVDLNPDLLSEENLKNFNFPNLDVAYNFYNNWYGKMKGFSARKGKERKNAMEEIIEKTYLCHREGKRPINTNEKTGKKKREAKPETRCLCPAKMKVRLDVHSGRWNVIKFCDAHNHEMLNPKYTGMLPVHRKLSEADILEMNNMRNAGITTPQIYGSFVSQSGGYNNVGFRKRDLYNEIGRQRMLQLSDDKGAIKYLREREQNEGSMFWRHTTDSKGRLQRLFWCDGQCQLDYKLFGDVLAFDATYRKNKYHFPLVVFSGINHHNQSTIFASCLVVDEIEETYVWVLEQLMVAMKGKMPLAVITDGDLAMRNAIKRVLPNAHHRLCGWHLCRNAASNVKNPKMVSMFRKCMLGDYEVSEFKHRWEVMVKEFRLEENNWVKEMYEKKRMWATAYIRGNFFAGFRTTSRCEGLHGQLGKFVHSRTDLVGFLKNYGRFLEVLGYNELEVDFESVRGDMVLETNLHALERSASKIFTKEVFILLRPALARGSTIRVMGCTQLMSQTIFTVSKYGRSQKRWQVSYIPEPLFIKCSCQRMESFGLPCDHIIGVMVHLNIQEMPKCLVLSRWTMGVKDSAYDIRDGRNSIWDSVYDARCGYLDFLCKKMNRLGGRSDTRFNEIKDWVSSKINLYSASHMSSGDGNENATDEGGPTLKDPIRVGSKGCAAGSSSQARRRPHKCRQCGLVGHNRTTCPNKRKYEAPLESGEVSTLLCNFLLSYLI. 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08835 760 ProSiteProfiles Zinc finger SWIM-type profile. 548 596 IPR007527 GO:0008270
Seca3g08835 760 PANTHER OS01G0519700 PROTEIN 54 630 - -
Seca3g08835 760 SMART 26again6 571 598 IPR006564 GO:0008270
Seca3g08835 760 SUPERFAMILY Retrovirus zinc finger-like domains 699 738 IPR036875 GO:0003676|GO:0008270
Seca3g08835 760 Pfam FAR1 DNA-binding domain 71 163 IPR004330 -
Seca3g08835 760 Pfam SWIM zinc finger 562 596 IPR007527 GO:0008270
Seca3g08835 760 Pfam MULE transposase domain 283 377 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08835 Seca-Chr3 224209446 224211728 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g08835 MULE 2.2e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08835 - - tpra:123913749 695.271