Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08832 ATGTCCACAGTGGCGGATCCTTCACTGGAAGACACAGATTTCTCAGAAACCGTCAAGTACATAAGCCAGATTCTTATGGAAGAGGACTTTGAGCAGAAACCATGTATGTGTTTTGACCCGCTGAGTCTAGAACACACTGAGAAAGCTTTCTATGATGCCCTTGAAGCTGAATTGCCTCTTTCCCCCAATCAACACCCTCTTGACATTCTGGAGTTTCCCATTGATTCTGGTAGCAGTGGCAGCGCCAATTCTCACGAGTTGAAGCCTCCTTCCCCTGATACTCCTGTTTCTGGTGATTCTGCTATGTTTTCCATTTCCCATACGCACTCTCAATTTGTTCCTCAGCATGCTTTGACTAATATTAGTGATGGGGTTTTGGATTTGGATTCTTCTGTTACCAAGATTTTGGCTCAAAATATCTTTAGTGATGAAAACTCTATGTTGCAGTTTAAAAGAGGGTTAGAGGAAGCTAGTAAGTTTCTTCCTCAAAGACCTCAGCTTTTCACTGGTCTGGAGAAAACCACAGTGGCTGCAGAGCCAAAAAGAGAGGTTGGAGCCAAGATGGAGTATGGTGTTAGGGAGAATTCACATGGGGTGTTGAAGAGTAGAAATAGAAAGAATTCACATGAGCGCCAAGGTAGTGATGATGAGGAAGGAAGAAGCAACAAGCAGTCTGCTGTTTGTGTTGAAGAAGAGAGTGAAATATCTGAAATGTTTGATAGGGTTTTGCTTAGTGTTGAAAATGTGCCACTGTGTGCTGAACAAGATGATGGATCAGTCATAGAGAATAACACACATTCTGGTGAACAACCACATTCATCTGATGGAGGCAAGACTCGTTCTAAGAAACAAGGAAGGAAGAAGGAAGCAGTGGATTTGAGAACCCTTTTGATTCTGTGTGCACAAGCTTTGTCTGCCAATGACAACAGGACTGCTAATGAACTGCTAAAGCAGATTAGGCAGCATTCTTCTCCCTCAGGTGATGCACCACAGAGGTTGGCTTATTACTTTGCAAATGGCCTAGAAGCACGTTTGGTTGGTGCTGGTTCTAGAACCAAAATACTTTATATGAGCCTAAAGAATTTCACTGCTGCTGATTTCCTGAAAGCTTACCAAGTTTTTATATCTGCTTGCCCTTTCAAGAAAATTGCACATTTCTTTGCAAATAAAATGATTCTAAAGACAGCTGAAAAGGCAGAGACCCTTCATATTATTGATTTTGGTATTCTGTATGGTTTCCAGTGGCCAATTCTTATCAAGTTTTTATCAAAAAGAACTGGTGGACCTCCCAAGCTACGCATCACAGGAATAGAGTATCCTCAAGCTGGCTTTCGTCCCGCAGAGAGAATTGAGGAAACTGGTCGGCGTCTAGCTAAATATTGTGAGCGTTTCAATGTTCCATTTGAGTACAAGTCCATAGCATCAAGAAACTGGGAAACCATTCCAATTGAAGATCTTGAAATTAAGAGCAATGAGGTACTTGCTGTGAACTGTCTGATAAGGTTTAAGAATTTACTTGATGAGACAATTGAAGTGAATAGTCCTAGAAATGCAGTTCTGAAGCTAATCAAGAAGATAAATCCGGATATTTTTGTTCAATCTGTAGTAAATGGATCTTATAATGCCCCTTTCTTTGTCACACGCTTCAGGGAGGCACTTTTCCATTATTCTGCTATTTATGATATGTATGATACTCTCATATCCCGTGCAAATAAATGGAGGTTGATGATTGAAAGAGAGTTTTTGGGTCGGGAGATTATGAATGTTGTATCATGTGAAGGTTTTGAGAGGGTTGAGAGGCCTGAGACATACAAACAATGGCAGGTTAGGAATACCAGGGCTGGTTTTAGGCAGCTCCAACTGGATAAGGAGCTAATGGCCAAATTTAGAGGTATGTTCAGAGAATGGTACCACAGAGATTTTGTCTTTGATCAAGATAACAACTGGATGCTTCAAGGTTGGAAAGGTCCAATTTTGGTCTTATCCTTCAATATGCTTTATACCAACTCCTTTCTGCAAGATTATGATGATCCTAACTCTGTATTTTCAAATCAGAACCCATTAACCAATGGGTTTGAGTTTGATGATTCATCTTCCCCTTCTTCTGGCACAAGCTCAAGTGGAGAATCCTCAGAATCTACTAAATATTCCAATAACATCCTCAGATACATAAGCGACATCCTCATGGATGAGGAAGATGACTTGGAGCGCAAACCCTGCATGTTGCAGGAATGTTTAAAACTCCAAGCTGCTGAAAAATCTTTCTATGATGTTCTTGCCCATCAAAAACCTGGTTGTTTCCGTGATGAAAGCATAGATAGCCCAGACCCAGATGGGAATTATGGTCGCACTGCTAGTTCTGAGAGCAATAGCAGCTGCACCACTGATAACTCATATGAGTCTGATTGGGTCAACCTTGTGGGTGAATTTGACTCTTCTTTCCTACAATTACAAACCCCTCTAGTTGATTCCCCGGAGTCACAAGCTGCTGGCCATTTTCACAATGGAACCTGGAATTTCATTCAGTCTCAAAGCAAGCCAGTGATGGTTGAAGTGGGTTCAGGTTCATCAGGTTCAGCTTCAGCACCCAGAGAAAAGAGAAGTTATCAGATGGATGATACTTCTGATGAACAAGAGGGAAGAAGAGGTAGCAAGCTTTCAGCTGTCTTTTCTGACAATTCAGAACCACCAGAGATCTTAGATGAGGTACTGCTTTGTCAGCAAGGGAAAAGTCAACCCCTTTGTGCTGCTACTGAACCACCACATAGTGTTGATTCAGGAAGAGGATCCAATGGAAAAGCAGCACGTTCTCGTTCAAAGAAAGGGTCTACCAACACAGGTGCAACTGTAGATTTGTGGACCCTGCTAACTCAATGTGCACAGGCTGTTGCAAACTATGACCAAAGGAATGCAAATGACTTACTCAACCAGATTAGGCAACACTCTTCACCTTATGGGGATGGACTTCAGCGTTTAGCTCATTACTTTGCCAATGGCCTTGAGACAAGACTGACTGCTGGGACCCCATCATATAAGCCCCTAGAAGTGGCAAATGCTGCTGATATGTTGAAAGCTTACAAACTATTTGTCACTGCATCTCCTTTGCAAAGGATGACAAATTTGTTTACAACCAAAACTATTATTAGTCTAGTGAAAAATGAGAGCAGTGTTCATATTATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCTTGCCTTATCAAAAGACTGTCACTAAGACATGGTGGTCCTCCAAAGCTTCGTATAACAGGAATTGAACTTCCTCAGCCAGGATTTCGGCCTGCCGAAAGGGTGGAGGAGACAGGGCGGCGTCTGGGAAACTACTGCAAGAAGTTCAATGTTCCATTTGAATACAATTGCCTTGCACAGAAATGGGAAACTATCAGGCTTGAGGATCTCAAGATAGATAGGAATGAAATAACTGTTGTTAGCTGTTTGTACCGGCTGAAGAACCTGCCTGATGAGACTGTGGCAGTGAACTGTCCAAGAGATGCTGTGTTGAAGTTGATCAGGAGGATCAATCCAAACATCTTCTTCCATGGGATTGTCAATGGCACTTATAATGCACCATTTTTCCTGACTCGGTTTAGGGAGGCACTTTACCACTTTTCATCACTGTTTGATATGTTTGAGGCTAATGTGCTTTGTGAGGACCAAGAAAGGGTGATACTTGAGAAAGGGTTGTTTGGAAGGGATGCCATCAATGTGATAGCAGGTGAGGGGGCAGAGAGGGTTGAGAGGCCTGAGACCTATAAGCAGTGGCAGGTTAGGAACCGTAGAGCTGGTTTCAAGCAAATCCGGTTAGATCCTGAATTGGTGAATCAATCCAAAGCAATGGTGAAGAGAGAATATCATAAAGATTTTGTAGTTGATGAGGATGGCAAGTGGGTTTTGCAGGGATGGAAAGGGCGTATTCTGAATGCTTTTTCTGCTTGGGTTCCTGCTTAA 3969 0.423 MSTVADPSLEDTDFSETVKYISQILMEEDFEQKPCMCFDPLSLEHTEKAFYDALEAELPLSPNQHPLDILEFPIDSGSSGSANSHELKPPSPDTPVSGDSAMFSISHTHSQFVPQHALTNISDGVLDLDSSVTKILAQNIFSDENSMLQFKRGLEEASKFLPQRPQLFTGLEKTTVAAEPKREVGAKMEYGVRENSHGVLKSRNRKNSHERQGSDDEEGRSNKQSAVCVEEESEISEMFDRVLLSVENVPLCAEQDDGSVIENNTHSGEQPHSSDGGKTRSKKQGRKKEAVDLRTLLILCAQALSANDNRTANELLKQIRQHSSPSGDAPQRLAYYFANGLEARLVGAGSRTKILYMSLKNFTAADFLKAYQVFISACPFKKIAHFFANKMILKTAEKAETLHIIDFGILYGFQWPILIKFLSKRTGGPPKLRITGIEYPQAGFRPAERIEETGRRLAKYCERFNVPFEYKSIASRNWETIPIEDLEIKSNEVLAVNCLIRFKNLLDETIEVNSPRNAVLKLIKKINPDIFVQSVVNGSYNAPFFVTRFREALFHYSAIYDMYDTLISRANKWRLMIEREFLGREIMNVVSCEGFERVERPETYKQWQVRNTRAGFRQLQLDKELMAKFRGMFREWYHRDFVFDQDNNWMLQGWKGPILVLSFNMLYTNSFLQDYDDPNSVFSNQNPLTNGFEFDDSSSPSSGTSSSGESSESTKYSNNILRYISDILMDEEDDLERKPCMLQECLKLQAAEKSFYDVLAHQKPGCFRDESIDSPDPDGNYGRTASSESNSSCTTDNSYESDWVNLVGEFDSSFLQLQTPLVDSPESQAAGHFHNGTWNFIQSQSKPVMVEVGSGSSGSASAPREKRSYQMDDTSDEQEGRRGSKLSAVFSDNSEPPEILDEVLLCQQGKSQPLCAATEPPHSVDSGRGSNGKAARSRSKKGSTNTGATVDLWTLLTQCAQAVANYDQRNANDLLNQIRQHSSPYGDGLQRLAHYFANGLETRLTAGTPSYKPLEVANAADMLKAYKLFVTASPLQRMTNLFTTKTIISLVKNESSVHIIDFGICYGFQWPCLIKRLSLRHGGPPKLRITGIELPQPGFRPAERVEETGRRLGNYCKKFNVPFEYNCLAQKWETIRLEDLKIDRNEITVVSCLYRLKNLPDETVAVNCPRDAVLKLIRRINPNIFFHGIVNGTYNAPFFLTRFREALYHFSSLFDMFEANVLCEDQERVILEKGLFGRDAINVIAGEGAERVERPETYKQWQVRNRRAGFKQIRLDPELVNQSKAMVKREYHKDFVVDEDGKWVLQGWKGRILNAFSAWVPA. 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08832 1322 ProSiteProfiles GRAS family profile. 943 1320 IPR005202 -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 914 945 - -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 259 286 - -
Seca3g08832 1322 ProSiteProfiles GRAS family profile. 284 666 IPR005202 -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 767 796 - -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 866 883 - -
Seca3g08832 1322 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 242 656 IPR005202 -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 187 229 - -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 69 101 - -
Seca3g08832 1322 Pfam GRAS domain family 293 660 IPR005202 -
Seca3g08832 1322 Pfam GRAS domain family 954 1319 IPR005202 -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 849 893 - -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 187 227 - -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 930 945 - -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 780 796 - -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 849 864 - -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 692 713 - -
Seca3g08832 1322 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08832 Seca-Chr3 224195107 224207539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08832 17 662 GRAS Transcription Factor Family AT1G07530 48.547 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g08832 GRAS 2.8e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08832 - - cam:101504630 1956.41