Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08823 ATGAGTTCTGTTTTCCGAGGGAGTAGGGGAGATATTGAAAGCGGCTTTTCAGAATATGCTCCTGACAGAAACACAATGCGTGTTCATCCATCTCGTCCAGTTCATAGCAATTCTCTGGCTTTTCTTACTACAGTTATTGTGTTATTCATGTTGTTGAGCTCTCCTCAGGTGTCACATTATCTTTTGCTCTGGCTTATAATGGCTATTTTTGCAATGGCTACAAGCCTGAGAATGTATGCAGCTTGTCAACATCTTCAAGCACATGCAAGGGCACATGCTGCAGCCGCCACTGGGTTGCTTGGCCATGATGAATTGCGGCTTCATGTGCCACCATCCATAGCAATTGCAACTAGAGGACGATTGCATGGACTTAGACTTCAGCTTGCACTTATTGATCGTGAATTTGATGAGCTAGATTATGACACTTTGAGAGCTCTGGATTCAGATACCGCTTCTAGGACTCCTTCGATGACTGAGGAAGAGATAAATGCCTTGCCTGTTCACACATACAAAGTTCCAGTTCCAACAAAGGATGGCTCAGCAGGGTTGGCATCCTCTTCAAGTGCACCTGAGATTAAACAAGACTCTGAAGGAGCAGAGGGAAGTATCCAAGTTTCAGAAGATGAGCTGACATGTACCATATGCTTGGACCAAGTTAAGAGAGGGGAGCTTGTTCGTAGCCTGCCATGCTTGCATCAGTTTCATACCAGCTGCATCGACCCATGGCTCCGTCAACAAGGAACATGTCCAGTTTGTAAATTTAGGATGGGGTCGGGATGGAGGGGAAACGGAGACAGCGAGTCCGATGGTTCAGACATTGTGTAG 825 0.4606 MSSVFRGSRGDIESGFSEYAPDRNTMRVHPSRPVHSNSLAFLTTVIVLFMLLSSPQVSHYLLLWLIMAIFAMATSLRMYAACQHLQAHARAHAAAATGLLGHDELRLHVPPSIAIATRGRLHGLRLQLALIDREFDELDYDTLRALDSDTASRTPSMTEEEINALPVHTYKVPVPTKDGSAGLASSSSAPEIKQDSEGAEGSIQVSEDELTCTICLDQVKRGELVRSLPCLHQFHTSCIDPWLRQQGTCPVCKFRMGSGWRGNGDSESDGSDIV. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08823 274 CDD RING-H2_PA-TM-RING 211 253 - -
Seca3g08823 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 258 IPR013083 -
Seca3g08823 274 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Seca3g08823 274 Pfam Ring finger domain 211 253 IPR001841 -
Seca3g08823 274 PANTHER TARGET OF ERK KINASE MPK-1 3 259 - -
Seca3g08823 274 MobiDBLite consensus disorder prediction 176 203 - -
Seca3g08823 274 SMART ring_2 212 252 IPR001841 -
Seca3g08823 274 SUPERFAMILY RING/U-box 207 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08823 Seca-Chr3 224025529 224030287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08823 1 274 C3H Transcription Factor Family AT3G55530 66.667 1.78e-119 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08823 K16283 - gmx:100805406 412.535