Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08821 ATGAATTCGGATGTTCCACCCTCTACGGCGTCGTATTGGTGCTATAGCTGCACCCGCTTCGTTCACCTCGTGGACCACAACGACGTCGTTTGCCCCCACTGCCAAAGCGGTTTCGTCGAAGAGATCCAAGCCGGTCAATCGCCGGCGGTTTCCCTCTTCGCCGACGGCTTTCACTCTTCAAGGAGGCAAGGGTTCCGCCGGAGACGCCGCAACGCCGGTAGCCGCTCGCCGTTTAACCCTGTAATCGTTCTCCGTGGACCCGGGGAGGACGATAGCGAGGGGAGCAGCTTCGAATTGTACTACGACGACGGCGATGGCAACGGTCTCCGACCACTGCCGCCGACCATGTCGGAGTTGTTGCTAGGTTCTGGCTTCGATCGGTTGCTGGAGCAGTTCTCTCAGATCGAGATCAACGGCTTCGGGCGGCCAGAGAATCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGCCGACGGTTGAGATTGCGGAGGAGCAGGTGGAGTCGGAGACGCACTGTGCGGTGTGCAAAGAAGCGTTCGAGCTAGGTTCGGAGGTGCGTGAGATGCCGTGTAAGCACCTTTACCATTCGGATTGCATTCTTCCATGGCTTTCGATGCACAACTCGTGCCCTGTGTGCCGCCACGAGTTGCCTTCGGATCAAAACCCTGTGGAAAACAGAGTCTCCGGTCAGATCGACGAAGAAGCGGTAGGGTTGACCATATGGAGGTTGCCGGGAGGTGGATTCGCCGTCGGGAGATTCTCCGGTGGTCGAAGAGCCGGTGACAGTCACTTGCCGATCGTGTACACGGAGATGGATGGTGGTGGTAACAATTCAAATTATGGAGGTTCCAGAAGAATCTCCCTCGCAGTGGGAAGCAGCAGAGTTAGAGAGAGTCGTGGAATTCGCAGAGTTTTTCGCAATTTCTTGTCGTTCTTTGGTTCTTTGAATAGAAACCGTAGCTTTTCCGGTTCTTTGTTCAGTAGAAGCTCACGGAGAAGGAGCACGACTTGGGTCAATGAAGATTAA 1026 0.5575 MNSDVPPSTASYWCYSCTRFVHLVDHNDVVCPHCQSGFVEEIQAGQSPAVSLFADGFHSSRRQGFRRRRRNAGSRSPFNPVIVLRGPGEDDSEGSSFELYYDDGDGNGLRPLPPTMSELLLGSGFDRLLEQFSQIEINGFGRPENPPASKAAIESMPTVEIAEEQVESETHCAVCKEAFELGSEVREMPCKHLYHSDCILPWLSMHNSCPVCRHELPSDQNPVENRVSGQIDEEAVGLTIWRLPGGGFAVGRFSGGRRAGDSHLPIVYTEMDGGGNNSNYGGSRRISLAVGSSRVRESRGIRRVFRNFLSFFGSLNRNRSFSGSLFSRSSRRRSTTWVNED. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08821 341 Pfam Ring finger domain 171 213 IPR001841 -
Seca3g08821 341 CDD RING-H2_RNF126-like 172 213 - -
Seca3g08821 341 SMART ring_2 172 212 IPR001841 -
Seca3g08821 341 ProSiteProfiles Zinc finger RING-type profile. 172 213 IPR001841 -
Seca3g08821 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 219 IPR013083 -
Seca3g08821 341 FunFam E3 ubiquitin-protein ligase RING1-like 134 219 - -
Seca3g08821 341 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Seca3g08821 341 SUPERFAMILY RING/U-box 152 220 - -
Seca3g08821 341 MobiDBLite consensus disorder prediction 64 95 - -
Seca3g08821 341 Pfam Protein of unknown function (DUF1117) 236 331 IPR010543 -
Seca3g08821 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 49 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08821 Seca-Chr3 224012763 224013788 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08821 111 224 C3H Transcription Factor Family AT5G01980 45.614 3.21e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08821 K11982 - gmx:100804867 456.062