Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08795 ATGGGAGCTTGTTGCTCTAAATTCTGTATATGCTGGTGGCCTTCCAATACAAAATCAAATCTTCAAGACTTGCCTGATAATGAAGATGGGAACAAGGGTGAGGAGAAAGGTGCTGGCTTTACTGAGTACAGCTTGGATCAATTGAGAACTGCCACCTCAGGATTTTCACCTGATAACATTGTCTCAGAGCACGGTGAGAAGGCTCCCAATGTTGTCTACAAAGGAAGGGTTGAAGATGATAGGTTGGTTGCTGTGAAGCGTTTCAACAAGTCTGCTTGGCCTGATCCTCGGCAGTTCCTAGAGGAAGCAAGAGCAGTGGGGCAGCTTCGGAATGAGAGGTTAGCTAACTTGGTTGGTTGTTGCTGTGAAGGAGAAGAGAGAGTGCTTGTTGCAGAGTTTATGCCCAACGAAACTCTCTCCAAACATCTCTTTCACTGTGAGTTTTCATTCTTTTCTGTTTCTACTATATGCATTCTTCATCAATCAGTAAGAGCAAAATAA 501 0.4391 MGACCSKFCICWWPSNTKSNLQDLPDNEDGNKGEEKGAGFTEYSLDQLRTATSGFSPDNIVSEHGEKAPNVVYKGRVEDDRLVAVKRFNKSAWPDPRQFLEEARAVGQLRNERLANLVGCCCEGEERVLVAEFMPNETLSKHLFHCEFSFFSVSTICILHQSVRAK. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08795 166 Pfam Protein tyrosine and serine/threonine kinase 71 146 IPR001245 GO:0004672|GO:0006468
Seca3g08795 166 Gene3D Phosphorylase Kinase; domain 1 29 133 - -
Seca3g08795 166 SUPERFAMILY Protein kinase-like (PK-like) 39 160 IPR011009 -
Seca3g08795 166 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 147 IPR045845 GO:0004672|GO:0009742
Seca3g08795 166 FunFam probable serine/threonine-protein kinase At4g35230 30 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08795 Seca-Chr3 223672113 223673177 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08795 37 143 Trihelix Transcription Factor Family AT1G70460 37.383 4.81e-18 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca3g08795 PK_Tyr_Ser-Thr 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08795 - - gmx:100804210 262.307