Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08794 ATGAAATGGGCAATGAGGCTAAGAGTGGCCTTGTATTTAGCACAAGCGTTGGAATACTGCAGCAGTAGAGGAAGGGCATTGTATCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGATGGCAACCCTAGACTCTCTTGTTTTGGACTAATGAAAAACAGCAGAGATGGTAGAAGCTACAGTACAAATTTAGCCTTCACCCCTCCTGAGTATTTGAGGACAGGAAGAATCATCCCAGAAAGTGTAATTTACAGTTTTGGAACACTTCTGCTTGATCTTCTGAGTGGCAAGCATATCCCACCCAGCCATGCACTTGACCTTATTCGAGGCAAAAATTTTCAGTTGCTTATGGACTCGTGTTTGGAAGGTCATTTTTCAGATGATGATGGAACTGAGTTAGTGAGATTAGCTACACGTTGTTTGCAGTATGAACCTCGTGAGAGGCCAAATGCCAAGTCACTTGTCACTGCTCTAACTCCTCTTCAAAAAGAAACTTCTGTTCCATCTCTTGTTTTATTGGGCATACCGGATGAGAGTGCATCATCAAAGGAAACAATTTCACTGACACCATTTGGTGAAGCTTGTTCAAAAAGAGATCTTAATTCAATACATGAAATTTTGGAAAGAGCAGGGTACAAGGATGATGAGGATGTTGCAAATGAGCTTTCCTTTCAAATGTGGACAGATCAAATACAAGAAACACTGAATTCAAAGAAGCACGGAGATTCTGCTTTTCATGCCAGAGACTACTCTAGGGCCATTGACTTCTATACTCAATTCATCGATGGTGGGACCATGGTATCACCAACTGTGTTTGCAAGGCGGTGCTTATGTTATCTGATGAACAACATGGCACAAGAAGCACTAGGAGATGCCATGCAAGCTCAATCAGTATCTCCCACCTGGCCTACTGCATTCTATCTCCAAGCAGTAGCTCTCTTCAGCCTTGGGATGGACATTGATGCACAGGAAAGTCTTAAAGACGGCACAACACTGGAAACCAGAAAGCATACAAATTGA 1023 0.4203 MKWAMRLRVALYLAQALEYCSSRGRALYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRIIPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFQLLMDSCLEGHFSDDDGTELVRLATRCLQYEPRERPNAKSLVTALTPLQKETSVPSLVLLGIPDESASSKETISLTPFGEACSKRDLNSIHEILERAGYKDDEDVANELSFQMWTDQIQETLNSKKHGDSAFHARDYSRAIDFYTQFIDGGTMVSPTVFARRCLCYLMNNMAQEALGDAMQAQSVSPTWPTAFYLQAVALFSLGMDIDAQESLKDGTTLETRKHTN. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08794 340 ProSiteProfiles Protein kinase domain profile. 1 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08794 340 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 338 IPR045845 GO:0004672|GO:0009742
Seca3g08794 340 FunFam probable serine/threonine-protein kinase At5g41260 1 176 - -
Seca3g08794 340 FunFam probable serine/threonine-protein kinase At4g35230 233 340 - -
Seca3g08794 340 SUPERFAMILY Protein kinase-like (PK-like) 2 165 IPR011009 -
Seca3g08794 340 Gene3D Transferase(Phosphotransferase) domain 1 1 176 - -
Seca3g08794 340 Gene3D Tetratricopeptide repeat domain 233 340 IPR011990 GO:0005515
Seca3g08794 340 Pfam Protein kinase domain 10 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g08794 340 SUPERFAMILY TPR-like 237 336 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08794 Seca-Chr3 223668420 223671866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08794 1 159 Glycoside Hydrolase AT3G07070 33.696 6.91e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca3g08794 Pkinase 8.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08794 - - gmx:732542 617.846