Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08787 ATGAGGAAGCCCGAGACATCTAGCAAAAACAACAATAACAATAACAAGCTTAGAAAGGGGTTGTGGTCACCCGAAGAAGATGAAAAGCTCATGAACTATATGCTAAACAATGGACAAGGTTGTTGGAGCGATGTGGCAAGAAATGCTGGCTTGCAAAGGTGTGGCAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAAAGAGGTGCTTTCTCACCCCAAGAAGAGGAACTCATCGTCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCTGGGAGAACAGACAATGAAATCAAAAATTTTTGGAATTCAACAATAAAGAAAAGGCTTAAGAACATGTCATCCACAACCACAACAACCTCAACCTCACCAAATGCAAGTGAGTCCTTATCTGAGCCTAATAAAGACCTCAACAACATGCATCATGGAGGCTTTATTTCTGCACCATCACATCAACATGTAGCAGCAAGCAGTTACATGCCTATGTTCAGTACTTCATCTCCATCACCATCAATTCAAACCACAGTTCTCAACACAATGATTGATAGGTTGCCTATGCCAGATTCTGGAGGAGGATACTTCAATGGTACAACAGGGCAATGTTTCTCAGTACTGCAGAGTGGGGTTGATTATAACAACAATGGTTCTTATTTAGAAAATGGAGTGTTTGGGAGTGTAAATATTGGAGTTGAAGGGGATATGTTTGTTCCTCCTCTAGAGAATGTTACTACTAACCTGAGAGTGGAGAGTACATGCAAGAAAGAGTTAACTAACAATAGTAATTACTTTGATGACATAAACACCATCCTTAATAACTGCAATATTGGGAACAATAACAGAGCTGAAAATAGGGGTGGGGTAGTAGTTGAGGATTTATTTCAACAACAGTTAACCAATATGGGAGAGTGGGACTTTGAGGACTTGATGAAAGATGTTTCCTCCTTTCCCTTTCTTGATTTTTCATTCTGA 1002 0.4042 MRKPETSSKNNNNNNKLRKGLWSPEEDEKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIVHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTTTTSTSPNASESLSEPNKDLNNMHHGGFISAPSHQHVAASSYMPMFSTSSPSPSIQTTVLNTMIDRLPMPDSGGGYFNGTTGQCFSVLQSGVDYNNNGSYLENGVFGSVNIGVEGDMFVPPLENVTTNLRVESTCKKELTNNSNYFDDINTILNNCNIGNNNRAENRGGVVVEDLFQQQLTNMGEWDFEDLMKDVSSFPFLDFSF. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08787 333 CDD SANT 22 66 IPR001005 -
Seca3g08787 333 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Seca3g08787 333 Gene3D - 74 148 - -
Seca3g08787 333 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Seca3g08787 333 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Seca3g08787 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Seca3g08787 333 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Seca3g08787 333 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g08787 333 Gene3D - 16 72 - -
Seca3g08787 333 SMART sant 71 119 IPR001005 -
Seca3g08787 333 SMART sant 18 68 IPR001005 -
Seca3g08787 333 FunFam MYB transcription factor 16 72 - -
Seca3g08787 333 CDD SANT 74 114 IPR001005 -
Seca3g08787 333 PANTHER MYB DOMAIN PROTEIN 55 11 238 - -
Seca3g08787 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Seca3g08787 333 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Seca3g08787 333 MobiDBLite consensus disorder prediction 123 144 - -
Seca3g08787 333 FunFam Transcription factor MYB46 73 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08787 Seca-Chr3 223555375 223558357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08787 3 331 MYB Transcription Factor Family AT3G08500 48.673 1.77e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g08787 Myb_DNA-binding 1.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08787 K09422 - gmx:100785810 419.468