Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08785 ATGGCTGCAACTCCTACCAAGTCTTTCCAATCTCCCTCAAAACCCTACCTCCGATCGCAATCCAATGCGAAATCCACACCCGCTGTAACCCCCGTCACACCACAATCCCTACCTATTCGCAGATCCACGCGTTCAAAGTCCCTCCACTTTGATTCCCCCGAACCTCCCCATGAATCTTGCGCAAATCAACTCGAAACTCCGAAAAGCAGGAGAGCCAGGGAGAATCTCGATCAACCTAGGTCTCGTCGATCCATTGATTACACTAAGGATTCTGGCAAAGATAAAGTCATCACCCGCACAAGTGCAACTAGAGGAAATGGAAATGCTTCTGTTGAAGCATCAAAGAAGAGAAATGAGAAGGGGTCAGTTGAAGTTTCCTTTGCTCCAGCATCTCCCGATCAATCGGAAACTAAGAAGAGGAAGAGGGAGGGTGAGAGAACGGTTGTTACTAGAGCTTTGGCTGCAAAAAAAGGGAAATCGGAGAATAGGCTAAAGAGTGTGGAGTTGCCAAAGCGCCATACTTACTATAAAAAAGTGGTTTATGATGGGGGCGAGTTTGAAGTCGGGGATGCTGTTTATGTGAAGAGGAGAGAAGATGCTACTTCTGATGATGAAGATCCCGAAGTGGAGGAGTGTAGGTTGTGTTTTTGTTCTGGCAATGAGATCATGATTGAGTGTGACGAATGTTTAGGTGGGTTTCATTTGAAATGCTTGAAACCGCCATTGAAGGACGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGTAAGATGGGTAGGGAAGTTAATTTTCCAAAGCCTCCACATGGTAAGAAACTAGTTAGGACAATGAGGCAGAAGCTTTTATCCAGTGATTTGTGGGCTGCTCATATTGAGAGTATATGGAAAGAAGTAGATGGCAACTACTGGTGTCGAGTTCGGTGGTATATAATCCCAGAAGAGACTTCTGCTGGGCGACAACCACATAACCTGAGCAGGGAGCTATATCAAACCAATGATTTTGCAAACATTGAGATGGAATCTGTCCTTAGACACTGCTATGTCATGACCCCCAAAGAATATGCTAAAGCAAAAGATGAGGGAGATGATATATTCTTCTGTGAATATGAATATGACATCCACTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGGAGAGACTGACAGTGATGAAGACTGGAATGTTGACAAGGAATCAGACTCTGACACTGATGAAGATGTTGAATATGAAGAGGAAAATATTAAAAATGCACAATCTCAACCCTCAACAGGCCATCAGTTAGCTGCAAATCTGCACAAGGGGCGGTTCTTTGGACTTCAGAAGATAGGCACGAAAAGAATTCCACAGCACATAAGGTCTCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTAGCATCACTGCCTAAATCCTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTACATTTATTAAAGGTGCTATTTCTGATGATCAATGTTTGGGACGTTGCCTCTACATTCATGGTGTTCCCGGAACTGGCAAAACAATGAGTGTATTATCAGTAATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAACCCTACTGTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAGAATATTTATAAGGTCATATATGAGGCATTAAATGGACACAGGGTCAGCTGGAAAAAGGCTCTCCACCTGCTAAATGAGAGGTTTGTAGAGGGGAAGAAAACTGGAGAAGAGGCTGACAGGCCATGTATTTTGCTAATAGATGAACTTGATCTTCTTGTGACCAGAAACCAGTCGGTTTTGTACAATATTCTTGATTGGCCTACTAAGCCACATTCCAAGCTAATTGTGATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTGCTTCCTCGTATATCAAGCCGAATGGGTATACAGAGGCTTTGCTTTAGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAAGGGAAATGATGTATTTGAAAAGCAAGCTATAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGTCGTGCTCTGGAGATATGCAGACGTGCAGCTGAAATAGCAGATTATCGTATGAAGGAGATAACTTCAAATACTGATATTGATGCTGCAGGAAAGGGACTTGTTGTTATGGCAGACGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTTATGAAAAACTGTTCCAGACTTAGTAAAATTTTCCTGACGGCTATGGTGCACGAGCTTTATAAGACAGGAATGGGAGAAACCACTCTTGAAAAGTTAGCAATGACGGTTTCAGCTCTGTGTACCAGCAACGGAGAAGTTTTTCCTGGATATGATACCCTGCTGCAAGTTGGCTGTAAGCTAGGCGAATGCAGGGTTATTTTATGTGAAGCAGGTGCCAAGCACAGGTTGCAAAAATTGCAGCTTAATTTCCCGAGTGATGATGTAGCCTTTTCGCTGAGAGACTGCAAAGATCTACCTTGGTTGTCGAAGTATCTAATGTAG 2598 0.4299 MAATPTKSFQSPSKPYLRSQSNAKSTPAVTPVTPQSLPIRRSTRSKSLHFDSPEPPHESCANQLETPKSRRARENLDQPRSRRSIDYTKDSGKDKVITRTSATRGNGNASVEASKKRNEKGSVEVSFAPASPDQSETKKRKREGERTVVTRALAAKKGKSENRLKSVELPKRHTYYKKVVYDGGEFEVGDAVYVKRREDATSDDEDPEVEECRLCFCSGNEIMIECDECLGGFHLKCLKPPLKDVPEGDWICGFCEARKMGREVNFPKPPHGKKLVRTMRQKLLSSDLWAAHIESIWKEVDGNYWCRVRWYIIPEETSAGRQPHNLSRELYQTNDFANIEMESVLRHCYVMTPKEYAKAKDEGDDIFFCEYEYDIHWHSFKRLADIDNERENGGETDSDEDWNVDKESDSDTDEDVEYEEENIKNAQSQPSTGHQLAANLHKGRFFGLQKIGTKRIPQHIRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFIKGAISDDQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYKVIYEALNGHRVSWKKALHLLNERFVEGKKTGEEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFSPYNYQQLQEIISSRLKGNDVFEKQAIEFASRKVAAISGDARRALEICRRAAEIADYRMKEITSNTDIDAAGKGLVVMADVEAAIQEMFQAPHIQVMKNCSRLSKIFLTAMVHELYKTGMGETTLEKLAMTVSALCTSNGEVFPGYDTLLQVGCKLGECRVILCEAGAKHRLQKLQLNFPSDDVAFSLRDCKDLPWLSKYLM. 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08785 865 Gene3D - 464 661 IPR027417 -
Seca3g08785 865 SMART BAH_4 243 384 IPR001025 GO:0003682
Seca3g08785 865 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 316 859 - -
Seca3g08785 865 FunFam Origin recognition complex subunit 1 661 753 - -
Seca3g08785 865 MobiDBLite consensus disorder prediction 67 97 - -
Seca3g08785 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 478 729 IPR027417 -
Seca3g08785 865 ProSiteProfiles BAH domain profile. 267 384 IPR001025 GO:0003682
Seca3g08785 865 MobiDBLite consensus disorder prediction 1 43 - -
Seca3g08785 865 MobiDBLite consensus disorder prediction 1 146 - -
Seca3g08785 865 Pfam AAA lid domain 686 719 IPR041083 -
Seca3g08785 865 FunFam Origin recognition complex subunit 1 465 664 - -
Seca3g08785 865 FunFam Origin recognition complex subunit 1 275 467 - -
Seca3g08785 865 SUPERFAMILY FYVE/PHD zinc finger 200 261 IPR011011 -
Seca3g08785 865 Pfam BAH domain 292 381 IPR001025 GO:0003682
Seca3g08785 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 269 IPR013083 -
Seca3g08785 865 SMART PHD_3 214 256 IPR001965 -
Seca3g08785 865 ProSitePatterns Zinc finger PHD-type signature. 212 255 IPR019786 -
Seca3g08785 865 MobiDBLite consensus disorder prediction 98 112 - -
Seca3g08785 865 Gene3D - 155 400 IPR043151 -
Seca3g08785 865 Pfam PHD-finger 215 257 IPR019787 -
Seca3g08785 865 SMART AAA_5 508 662 IPR003593 GO:0016887
Seca3g08785 865 Pfam ATPase family associated with various cellular activities (AAA) 513 658 IPR003959 GO:0005524|GO:0016887
Seca3g08785 865 Gene3D - 662 736 - -
Seca3g08785 865 ProSiteProfiles Zinc finger PHD-type profile. 209 258 IPR019787 -
Seca3g08785 865 MobiDBLite consensus disorder prediction 392 420 - -
Seca3g08785 865 FunFam Origin recognition complex subunit 1 207 274 - -
Seca3g08785 865 MobiDBLite consensus disorder prediction 389 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08785 Seca-Chr3 223439031 223445882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08785 4 864 Core DNA Replication Machinery Family AT4G14700 61.468 0.0 1028
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca3g08785 AAA 8.7e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08785 K02603 - gmx:100798547 1436.4