Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08778 ATGGCTGATAAGAACCAGTCCCCAACAGTTGCACAAAACCTTGCTGGCCAGCTCCATCTGAGATCCAGAATTTCCCCACATGTTGCAACTTGTTATGGAGGTTCAGCTGCTTCACCAGTGTTTGTTCCATCCCCATCAGAGAAAAGCTTTGCAAGCTTTGCCACTGATTTTCTCATGGGTGGAGTTTCAGCAGCAGTGTCCAAGTCTGCAGCTGCTCCTATTGAGCGTGTAAAGCTTCTTATTCAAAATCAAGATGAGATGATTAAAGCTGGTCGACTCTCTGGACCCTACAAGGGCATTGGAGATTGTTTCACCAGAACAATCAAAGACGAAGGGTTTGCTTCATTGTGGAGAGGAAACACTGTCAATGTTATCCGTTACTTCCCAACACAGGCCTTGAACTTTGCATTTAAAGATTACTTTAAGAGTCTATTCAACTTCAAGAAAGAGAGGGATGGGTACTGGAAATGGCTTGCAGGTAACGTGGCATCTGGTGCTGCAGCAGGAGCTTCATCCTCTGTGTTTGTTTATTCATTGGATTACGCTCGAACCCGCCTGGCCAGTGATGCCAAGGCTGTAAAGCAAGGTGGAGAGAGGCAATTCAATGGTTTGATCGATGTCTATAGGAAGACCCTTCAATCAGATGGTATTGCTGGCCTCTACCGTGGCTTCAATGTTTCTTGGGTTGGAATCATTGTCTACCGTGGTTTATACTTTGGAATGTATGATTCTCTCAAGCCAGTGCTCTTGGTTGGAACATTGCAGGTCAGACATAACATTACATTTTTATGTAGCGAATTGCCAATAATAGCATACATAAAATAA 825 0.4412 MADKNQSPTVAQNLAGQLHLRSRISPHVATCYGGSAASPVFVPSPSEKSFASFATDFLMGGVSAAVSKSAAAPIERVKLLIQNQDEMIKAGRLSGPYKGIGDCFTRTIKDEGFASLWRGNTVNVIRYFPTQALNFAFKDYFKSLFNFKKERDGYWKWLAGNVASGAAAGASSSVFVYSLDYARTRLASDAKAVKQGGERQFNGLIDVYRKTLQSDGIAGLYRGFNVSWVGIIVYRGLYFGMYDSLKPVLLVGTLQVRHNITFLCSELPIIAYIK. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08778 274 PRINTS Adenine nucleotide translocator signature 130 142 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g08778 274 PRINTS Adenine nucleotide translocator signature 53 65 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g08778 274 PRINTS Adenine nucleotide translocator signature 156 169 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g08778 274 PRINTS Adenine nucleotide translocator signature 97 118 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g08778 274 PRINTS Mitochondrial carrier protein signature 56 69 IPR002067 GO:0055085
Seca3g08778 274 PRINTS Mitochondrial carrier protein signature 119 139 IPR002067 GO:0055085
Seca3g08778 274 PRINTS Mitochondrial carrier protein signature 221 239 IPR002067 GO:0055085
Seca3g08778 274 PRINTS Mitochondrial carrier protein signature 171 189 IPR002067 GO:0055085
Seca3g08778 274 PRINTS Mitochondrial carrier protein signature 69 83 IPR002067 GO:0055085
Seca3g08778 274 Pfam Mitochondrial carrier protein 52 148 IPR018108 -
Seca3g08778 274 Pfam Mitochondrial carrier protein 155 249 IPR018108 -
Seca3g08778 274 ProSiteProfiles Solute carrier (Solcar) repeat profile. 51 144 IPR018108 -
Seca3g08778 274 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 46 254 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Seca3g08778 274 SUPERFAMILY Mitochondrial carrier 50 259 IPR023395 -
Seca3g08778 274 ProSiteProfiles Solute carrier (Solcar) repeat profile. 156 248 IPR018108 -
Seca3g08778 274 Gene3D Mitochondrial carrier domain 47 267 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08778 Seca-Chr3 223218676 223222671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08778 1 255 Antiporters AT3G08580 70.070 1.58e-126 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08778 K05863 - gmx:100800843 395.586