Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08777 ATGAATAGTTCGGGTTTAGGTGGTGGTTTTCTGGCTGGTCCCAGTGGGGGGATTTTGGACCTGGAATCTCCATTCCATAGGCACCAGCAGACACAGTTGGGTCACCCATGTCACCCACCAGTAACTAATCAACAGCACATGAATATGATAAGTGGTTTGGAAAATGATCACCCAATTGGCCTGATTGAAGTGAAAAATTTGAATGCGGCATTGAATTATGGTAAAGGAAAGGCAGTTGCTTCTTCTAATCCTGCCAATAGTAACGATTTGAGTGAAGATGATGAGCCAAGTTATGCGGAAGAGGGGAATTGCGAGAACTTGGATGGCGGCAAGGGCAAAAAAGGGTCTCCTTGGCAGCGAATGAAGTGGACAGACAATGTGGTTGGGCTTCTTATAGCAGTGGTGAGTTGTGTGGGTGATGATGGTACTATTGGTGGCATGGATGGTGGTTCTAAAAGGAAATCTGGTGTTTTACAAAAGAAGGGCAAGTGGAAAACTGTCTCCAAGATAATGATAAACAAGGGTTGTCATGTTTCGCCTCAGCAGTGTGAGGACAAATTCAATGACTTAAATAAGAGGTACAAGAGGTTAAATGAGATACTTGGAAGGGGAACTTGTTGCCAGGTGGTTGAGAATCCTGCACTGATGGATTCAATGCCTAACCTGTCAGCTAAGGCCAAGGAAGACGTCAGGAAGATACTGAGTTCAAAACATCTGTTCTATAAGGAGATGTGTGCCTACCATAACGGGCAAAGGATACCAAATTCCTATGATCTTGACTTACAGGTTTATACTGTGGAACATGGGAGGGACTCAAGAGATAATAATGGCTCTGATGATGAAGATGATGATAACAACGAAAGCGAGGATGATGAGTTGGATAATGAGATTAATATTAATGCACATGGGGATGGAGGCAGGATGGAGGAGTTCTGTGATAGAAATAAATCAAGTGAGGAGGATGGGCACTTTTGGCCGCGATCTGCTGGGATGGAAAAATTTGAGGTTGAAATGGCAAGGGTTTTTCAAGACCCCACAAAGTCAGTGTGGGAGCGAAAAGAGTGGATTAAGATGCAGATGTTGCAGCTTCAAGAGCAAAATGTCAGCTACCAGGCACAAGCTCTTGAACTTGAGAAACAAAGGTTTAAGTGGTTAAGATACTGCAGCAAGAAGGACAGTGAGCTGGAGAGGCTGAGGTTGGAGAACAAGAGGATGAATTTGGAAAATGAGCGCAGGATCTTGAAACTGAAGCAGAAAGAGCATGAGATTGATTGCAGTAGGCCTGAGAAGTCCTTAGACCCTGCCTCTCTTGGAATCAACAGGTCACAAGGGAGGGAACATATCAACCTGGCCAGACAGCAGTAG 1365 0.4454 MNSSGLGGGFLAGPSGGILDLESPFHRHQQTQLGHPCHPPVTNQQHMNMISGLENDHPIGLIEVKNLNAALNYGKGKAVASSNPANSNDLSEDDEPSYAEEGNCENLDGGKGKKGSPWQRMKWTDNVVGLLIAVVSCVGDDGTIGGMDGGSKRKSGVLQKKGKWKTVSKIMINKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTCCQVVENPALMDSMPNLSAKAKEDVRKILSSKHLFYKEMCAYHNGQRIPNSYDLDLQVYTVEHGRDSRDNNGSDDEDDDNNESEDDELDNEININAHGDGGRMEEFCDRNKSSEEDGHFWPRSAGMEKFEVEMARVFQDPTKSVWERKEWIKMQMLQLQEQNVSYQAQALELEKQRFKWLRYCSKKDSELERLRLENKRMNLENERRILKLKQKEHEIDCSRPEKSLDPASLGINRSQGREHINLARQQ. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08777 454 Gene3D - 123 196 - -
Seca3g08777 454 Pfam Myb/SANT-like DNA-binding domain 120 246 IPR044822 -
Seca3g08777 454 MobiDBLite consensus disorder prediction 436 454 - -
Seca3g08777 454 PANTHER F16F4.11 PROTEIN-RELATED 2 425 - -
Seca3g08777 454 MobiDBLite consensus disorder prediction 268 325 - -
Seca3g08777 454 MobiDBLite consensus disorder prediction 277 294 - -
Seca3g08777 454 MobiDBLite consensus disorder prediction 306 325 - -
Seca3g08777 454 MobiDBLite consensus disorder prediction 77 117 - -
Seca3g08777 454 Coils Coil 360 380 - -
Seca3g08777 454 MobiDBLite consensus disorder prediction 424 454 - -
Seca3g08777 454 Coils Coil 388 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08777 Seca-Chr3 223209214 223211731 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca3g08777 Myb_DNA-bind_4 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08777 - - gmx:100798932 713.375