Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08775 ATGACCAATCCCTACTGCTCCAATGGTTATTGGTTTGACCTCAATTCTCCATCACCACCACCTTCCTCTAACCAACCATTCTATTTTCATCATCATCATAACCACACCATCTCTTTCTCTCTTGATCATGAACCTTCTCTTCCTCCTACAAGAGAAGCCCTTCCTCTCCTTAACCTAAGCCCACCTTCAAAACGTGAAGATCTAGAATCTTCCTTTAGTGCCATGGAAGTGATCAACAAGAAGAAGGAGAAAGAAGTAACAAGCATATCAATATCCAGCAGTTCTTTGGAGGATGATGCTACAGCTGTGACGGTGGCTTTGCACTTAGGGCTTCCAACCATAACTTCAGCTGATTTAGCTTCAAATTTATACTCTTCCACCGAGATCTCAGATGATAAAGAAGAAAAAACAGTGATGATGAGTAATACTACTATTGTTGCTAGTTCTGAGAGTGAGTATCCATCATCAAATAGTAGAATTAATAGGGGTCAGTATTGGATCCCTACCCCTTCTCAGATTCTGATTGGTCCAACACAGTTTTCATGCCCCCTTTGTTTCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACACAACCAACAGCTATGCTAAGACTCCCATGTTATTGCTGTGCACCGGGATGCAAGAACAACATTGACCATCCAAGAGCAAAACCATTGAAGGACTTTAGAACCCTTCAAACACATTATAAGAGGAAGCATGGAATCAAGCCATTCATGTGTAGGAAGTGTTGCAAAGCATTTGCTGTGAGAGGTGATTGGAGGACTCATGAGAAGAATTGTGGGAGGCTTTGGTATTGTTCTTGTGGGTCCGATTTTAAGCATAAAAGGTCCCTTAAGGATCATATCAAGGCATTTGGAAATGGACATAAAGCTTATGGAATTGACGATTGTCTTGATCAAGATGATGAAGGAGGCTCTGAAATTGAGCAAGATAATGAATCTTGCCAGTTATAG 1032 0.4147 MTNPYCSNGYWFDLNSPSPPPSSNQPFYFHHHHNHTISFSLDHEPSLPPTREALPLLNLSPPSKREDLESSFSAMEVINKKKEKEVTSISISSSSLEDDATAVTVALHLGLPTITSADLASNLYSSTEISDDKEEKTVMMSNTTIVASSESEYPSSNSRINRGQYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGRLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDDCLDQDDEGGSEIEQDNESCQL. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08775 343 Gene3D Classic Zinc Finger 179 202 - -
Seca3g08775 343 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Seca3g08775 343 PANTHER ZINC FINGER PROTEIN WIP2 30 339 IPR043584 GO:0003700|GO:0010468
Seca3g08775 343 SUPERFAMILY beta-beta-alpha zinc fingers 246 284 IPR036236 -
Seca3g08775 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Seca3g08775 343 FunFam Zinc finger protein WIP2 233 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08775 Seca-Chr3 223082726 223085080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08775 51 342 C2H2 Transcription Factor Family AT3G57670 61.994 4.27e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g08775 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08775 - - gmx:100789416 489.574