Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08757 ATGGGCTCAATGAACTCAAACAACTGGCTTTCTTTCCCCCTTTCTCCAACTCATTCTTCTTTACCAGCTCATCTCCAAGCAACTCAATCTCATCAGTTTTCTCTTGGGACATTAGTCAATGAGAACATGGAAAGCCCTTTCCAAAATCATGATTGGAATCTGATTAATACTCACAGCAGCAACGAAGTTCCTAAGGTTGCAGATTTTCTTGGTGTGAGCAAGTCTGAGAATCAGTCAGATCTTGCAGCTTTTAATGAAATTCAATCCAATGATTCAGATTACCTCTTCACCAACAACAGTAGCCTCATGCCGATGCAAAACTCAGTGGTGGCTACTAATTCTAGCAGTACTTATGAGTATCAAGAAAACAGTGCTAACAATAACCTTCAGTCATTGACATTATCCATGGGAAGTGGTAAGGATTCAACATGTGAAACTAGTGGTGATAATAATAGTACTAATACTGTTGAAGCTGCACCTAGAAGAACTTTGGATACCTTTGGCCAGAGAACATCAATATACCGTGGTGTAACAAGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGTTATCTCAGGTGGGTATGACAAAGAAGAGAAAGCAGCAAGGGCCTATGATTTAGCTGCACTCAAATACTGGGGGACATCTACCACTACCAACTTTCCCATCAGTAACTATGAAAAGGAATTGGAAGACATGAAGCACATGACTAGACAAGAATTTGTGGCCGCCATAAGAAGGAAGAGCAGTGGATTCTCAAGAGGTGCATCAATGTATCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGCAGGGTTGCAGGAAACAAAGATCTATATTTAGGAACTTTCAGTAAGTTCCATGCATATATAACACAACACATACACACGTATATACCAATAATACAAATCACTGACCATTTCACAGGTACTGAAGAAGAAGCTGCAGAAGCATACGACATTGCTGCAATAAAGTTCAGAGGACTCAATGCAGTTACAAATTTCGACATGAGTCGTTACGATGTGAAAGCCATACTTGAAAGTAACACTCTCCCAATAGGAGGAGGAGCTGCCAAACGCCTGAAAGAGGCTCAAGCATTGGAATCTTCTAGAAAAAGAGAAGAGATGATAGCACTTGGATCAAGTTTTCAATATGGAAGCTCAAGCTCAAGTAGGCTACAAGGTTACCCTCTAATGCAGCATCAGTTTGACCAACCTCAACCATTGCTAACACTCCAAAACCAGGACATGTCACAGTATAGCACTACTCATCATGATCACTTTCATCAGAGTTACATACAAACACAGCTTCAGTTGCACCATCACCAGCAGAGTGGATCATACATGCAGCAATCAAATAATAATAGTAACAGTAACAATGGACAGTTTTATAACAGTTATCTTCAGAACCACCCGGCTTTGCTTCAGGGGTTGATGTCTTCGATGGAAGGTGGAGGGTCAAGTGGGAGTTATAGTGGAGGGTATATGGGGAATAATCATAATAATGGACTTGGAATGGCTTCGAGTTCTTCAAATAATGCAACAGCATCAGCGGAGGAACTTGCACTTGTTAAGGTTGATTACGACATGCCTTCCGGAGGTTATGGCGGCTGGTCGGCGGCGGACTCCATGCAAGCCTCGAATGGAGCTGGTGTTTTCACAATGTGGAATGAATGA 1743 0.4211 MGSMNSNNWLSFPLSPTHSSLPAHLQATQSHQFSLGTLVNENMESPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSDLAAFNEIQSNDSDYLFTNNSSLMPMQNSVVATNSSSTYEYQENSANNNLQSLTLSMGSGKDSTCETSGDNNSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVISGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELEDMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSKFHAYITQHIHTYIPIIQITDHFTGTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSFQYGSSSSSRLQGYPLMQHQFDQPQPLLTLQNQDMSQYSTTHHDHFHQSYIQTQLQLHHHQQSGSYMQQSNNNSNSNNGQFYNSYLQNHPALLQGLMSSMEGGGSSGSYSGGYMGNNHNNGLGMASSSSNNATASAEELALVKVDYDMPSGGYGGWSAADSMQASNGAGVFTMWNE. 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08757 580 Gene3D AP2/ERF domain 275 312 IPR036955 GO:0003700|GO:0006355
Seca3g08757 580 Gene3D AP2/ERF domain 327 360 IPR036955 GO:0003700|GO:0006355
Seca3g08757 580 Gene3D AP2/ERF domain 173 241 IPR036955 GO:0003700|GO:0006355
Seca3g08757 580 SMART rav1_2 173 245 IPR001471 GO:0003700|GO:0006355
Seca3g08757 580 SMART rav1_2 275 364 IPR001471 GO:0003700|GO:0006355
Seca3g08757 580 PRINTS Ethylene responsive element binding protein signature 174 185 IPR001471 GO:0003700|GO:0006355
Seca3g08757 580 PRINTS Ethylene responsive element binding protein signature 221 241 IPR001471 GO:0003700|GO:0006355
Seca3g08757 580 ProSiteProfiles AP2/ERF domain profile. 275 358 IPR001471 GO:0003700|GO:0006355
Seca3g08757 580 SUPERFAMILY DNA-binding domain 274 310 IPR016177 GO:0003677
Seca3g08757 580 CDD AP2 274 360 IPR001471 GO:0003700|GO:0006355
Seca3g08757 580 SUPERFAMILY DNA-binding domain 332 360 IPR016177 GO:0003677
Seca3g08757 580 MobiDBLite consensus disorder prediction 461 487 - -
Seca3g08757 580 FunFam AP2-like ethylene-responsive transcription factor ANT 172 241 - -
Seca3g08757 580 Pfam AP2 domain 173 231 IPR001471 GO:0003700|GO:0006355
Seca3g08757 580 CDD AP2 172 241 IPR001471 GO:0003700|GO:0006355
Seca3g08757 580 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 64 462 - -
Seca3g08757 580 ProSiteProfiles AP2/ERF domain profile. 173 239 IPR001471 GO:0003700|GO:0006355
Seca3g08757 580 SUPERFAMILY DNA-binding domain 172 241 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08757 Seca-Chr3 222866843 222870236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08757 4 580 AP2-EREBP Transcription Factor Family AT1G51190 62.641 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g08757 AP2 1.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08757 K09285 - gmx:100788471 811.986