Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08747 ATGGATTCAGATCTTCAGCCACATCAACAGATAAATTCCTCTGGTTTGACACGTTACAGATCAGCACCGAGTTCATATTTCAACAACATCATTGACAGAGAGTTCTACGAGCACATTTTCAATCGATCTTCGAGCCCTGAAACAGAGCGAATTTTCTCGCGGTTTGTCAACAGTTTTGGGGGTGATGGTGCTTCAGCAGCAGTAGCAGAAGAACAAGAAGATTCTCTAACTCAAAAAATCTCAGTAACTGATTGTGGTGGAGCAGTGAAGGAAGAGATTAATAACCAGCAGGATCAGGGTATGCATTCCACCATCAATAATGAACAAGTGATTCTACAACAGGGTAACATCAATGATTATAACTCTGCAAATCATGGATTTTACCAAACCTCTGCAAGACCACCTTTGCCAAATCAGAATATGGATGGAACTTATTCTTTGGGAGTTAATCGGTTGCAACAGATGAAAACTGGTGGAGGACATAATTCTAATCTTATCAGGCATAGTAGTTCACCTGCAGGACTATTTTCCCAAATCAACATTGAAAATGGGTTTGTTAGTATGAGAGGCATGGGAACTTTAGGAGCTGTGAATAACTCAGTGGAAGATGCAAAATTGTCCACTGCAAGGAGGTTGAAGAATCCATCAAACTACTCATCAGGGAGAATGTCGTCAATAGCTGAAATTGGGGATAAAGGGAATAATATAGAAAGCAATCAAGACAGTGAAGCTTTTGCTGAAACCAATGGTAATGATTTTATCTCAGGTTTCCCTGTTGGTCCATGGGATGATTCTGCAATTATGTCTGACAACAATGTCAGTGGTCTGAAAAGGTTTAGGGATAATGATGCAAAACCATTTTCTGGTTTAAATGCAGCTGAGACTCAGAATGAAACAGGACAATCTCCTTCTCCTTTGGCTCATCACTTGAGTTTGCCAAACACTTCAGCTGAAATGGCAGCTATTGAGAAGTTTCTTCAATTCTCAGATTCTGTTCCATGCAAAATTCGTGCCAAGCGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGGACTAAAATTAGTGAGCGTATGAGGAAACTACAAGATCTTGTCCCAAACATGGACAAGCAAACGAACACAGCAGACATGTTGGACTTGGCTGTGGATTACATTAAAGACCTTCAAAAGCAAGTTGAGACGCTTTCAGACTGTCAAGCAAAGTGTACGTGTCCACACAAGCAATAA 1239 0.41 MDSDLQPHQQINSSGLTRYRSAPSSYFNNIIDREFYEHIFNRSSSPETERIFSRFVNSFGGDGASAAVAEEQEDSLTQKISVTDCGGAVKEEINNQQDQGMHSTINNEQVILQQGNINDYNSANHGFYQTSARPPLPNQNMDGTYSLGVNRLQQMKTGGGHNSNLIRHSSSPAGLFSQINIENGFVSMRGMGTLGAVNNSVEDAKLSTARRLKNPSNYSSGRMSSIAEIGDKGNNIESNQDSEAFAETNGNDFISGFPVGPWDDSAIMSDNNVSGLKRFRDNDAKPFSGLNAAETQNETGQSPSPLAHHLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVETLSDCQAKCTCPHKQ. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08747 412 Gene3D - 343 409 IPR036638 GO:0046983
Seca3g08747 412 SMART finulus 348 398 IPR011598 GO:0046983
Seca3g08747 412 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 406 - -
Seca3g08747 412 MobiDBLite consensus disorder prediction 289 307 - -
Seca3g08747 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 404 IPR036638 GO:0046983
Seca3g08747 412 MobiDBLite consensus disorder prediction 285 307 - -
Seca3g08747 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Seca3g08747 412 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Seca3g08747 412 FunFam Transcription factor bHLH130 family 343 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08747 Seca-Chr3 222616774 222620434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08747 8 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.443 5.98e-73 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g08747 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08747 - - gmx:100805812 550.821