Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08679 ATGAAAATTCAGTGTGATGTGTGTGAGAAAGCTCCGGCAACGGTGATTTGTTGCGCGGATGAGGCGGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCAAACAAACTTGCAAGCAAGCACCAGAGGCTTCTTCTTCAATGTCTATCAAACAAGCTTCCCAAATGTGACATATGCCAAGAAAAGACAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGTGATGAACCAATTCATTCAGCTGGTAGCCTTTCTGCAAACCACCAGCGCTTCCTTGCTACTGGTATCCGAGTGGCCATGAATTTTAATTGCACCAAAGACAATGAAAAAACTCACTTGGAGGAGCCACCTAATAGGAATGCACAGCAAGTTTCTACAAAAATTCCTTCTCAGGAAGTGCCTAACTTCACATCCTCTTGGGCTGTTGATGACTTATTGGAATTGACAGGCTTTGAATCACCTGACAAAGTAAGACAGATTTATAAGGAATTTGGAGAGCTGGAATGGCTCACAGATGAGGGTCTTTTTGGTGAACAATTTACTCAGGAAGCATTGGCTGTGGCTGAAGTCCCTCAGCTTCCAGTAACTCATACTAGCAGTGATGTTGCCTCATACAGAACCTCCAAGTCCTACATGTCTCACAAAAAGCCTAGGATTGAAGTCCTAAACAATGATGAGGAAGATGATGAGTATTTCACTGTGCCTGATCTTGGCTGA 735 0.4313 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQEKTAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVAMNFNCTKDNEKTHLEEPPNRNAQQVSTKIPSQEVPNFTSSWAVDDLLELTGFESPDKVRQIYKEFGELEWLTDEGLFGEQFTQEALAVAEVPQLPVTHTSSDVASYRTSKSYMSHKKPRIEVLNNDEEDDEYFTVPDLG. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08679 244 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca3g08679 244 CDD Bbox1_BBX-like 5 47 - -
Seca3g08679 244 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca3g08679 244 SMART bboxneu5 52 99 IPR000315 GO:0008270
Seca3g08679 244 MobiDBLite consensus disorder prediction 115 134 - -
Seca3g08679 244 CDD Bbox1_BBX-like 56 98 - -
Seca3g08679 244 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Seca3g08679 244 Gene3D Classic Zinc Finger 1 92 - -
Seca3g08679 244 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Seca3g08679 244 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Seca3g08679 244 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08679 Seca-Chr3 221579294 221581503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08679 1 163 Orphan Transcription Factor Family AT1G06040 62.209 1.43e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca3g08679 zf-B_box 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08679 - - vun:114183169 435.261