Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08675 ATGGATAAGGACAAATCTCTCGGTATTGGCGGTGGTTTTCCACCTCCATCAGGTCGTTATTCTGGTTATTCACCCACTGCTAGTGCGTTTAATGTGAAATCCGAACCTTCTTCATCGTATCCTCCACTTGTTCCTGGAACCAGCTCAGATTCTAGTCATTTTGGACATGGAATGTCCACAGACTCTAGTGGATTTAGCCATGATATTAGCAGAATGCCTGATAATCCCCCGAGGAATAGAGGTCATAGGCGTGCTCATTCTGAGATTCTCACCTTGCCCGATGATATTAGCTTTGATAGTGATCTTGGTGTGGTTGGTGGTGCTGATGGGCCTTCATTCTCTGATGATACTGAGGAAGATTTACTGTCCATGTACCTTGATATGGATAAGTTCAATTCATCATCTGCTACATCCACATTTCAAATGGGTGAGCCGTCTAATGCTGCATCGGCGGGAGGACCAACATTGGGAGCACCCACCTCTTCTGCAGAAAACATTGTTATTGGTACTAATGAAAGGCCCAGAGTTAGACACCAGCATAGCCAATCCATGGATGGGTCAACAACCATCAAACCTGAGATGCTAGTCTCAGGTTCAGAAGACATGTCTGCAGCTGATTCCAAAAAAGCAATGTCAGCAGCCAAGCTTGCAGAACTTGCCTTGATTGACCCCAAGCGAGCAAAAAGGATATGGGCAAATAGACAGTCTGCTGCAAGGTCAAAAGAGAGGAAGATGCGCTACATTGCTGAGCTTGAAAGGAAGGTGCAGACATTGCAAACAGAAGCAACGTCTTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAAACGGACTGAATTCTGAGAACAGTGAGCTAAAGCTGCGGTTGCAAACCATGGAGCAACAAGTTCACTTGCAAGATGCATTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGAAAATACTGACTGGGCAAGCCATGCCACCTAATGGAGGACCTGTGATGAACTTTGCTTCTTTTGGAGGGGGCCAGCAGTTCTATCCCAATAATCATGCCATGCACACTCTTTTAGCTGCCCAACAGTTTCAACAGCTCCAAATTCATCCTCAGAAACAACAGCAGCAGCAGCAGCAGCATCAGTTTCAGCAACAAATACAACAACAAATGCAGCAGCAGCATCAGGAGCAACAACATCAACAATCAGGGGACATGAAAATGAGAGCAGCTTCTCCAATCCCCAAAGATAATGCTTCATCAGATGTAAATCCTTCAACGGCCAAGGATTGTTGA 1275 0.4486 MDKDKSLGIGGGFPPPSGRYSGYSPTASAFNVKSEPSSSYPPLVPGTSSDSSHFGHGMSTDSSGFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSTFQMGEPSNAASAGGPTLGAPTSSAENIVIGTNERPRVRHQHSQSMDGSTTIKPEMLVSGSEDMSAADSKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKILTGQAMPPNGGPVMNFASFGGGQQFYPNNHAMHTLLAAQQFQQLQIHPQKQQQQQQQHQFQQQIQQQMQQQHQEQQHQQSGDMKMRAASPIPKDNASSDVNPSTAKDC. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08675 424 FunFam probable transcription factor PosF21 224 277 - -
Seca3g08675 424 SMART brlzneu 221 285 IPR004827 GO:0003700|GO:0006355
Seca3g08675 424 MobiDBLite consensus disorder prediction 21 69 - -
Seca3g08675 424 MobiDBLite consensus disorder prediction 1 84 - -
Seca3g08675 424 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 223 286 IPR004827 GO:0003700|GO:0006355
Seca3g08675 424 SUPERFAMILY Leucine zipper domain 225 276 IPR046347 GO:0003700|GO:0006355
Seca3g08675 424 MobiDBLite consensus disorder prediction 365 424 - -
Seca3g08675 424 Coils Coil 366 386 - -
Seca3g08675 424 MobiDBLite consensus disorder prediction 365 399 - -
Seca3g08675 424 Gene3D - 224 277 - -
Seca3g08675 424 MobiDBLite consensus disorder prediction 136 162 - -
Seca3g08675 424 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 36 395 - -
Seca3g08675 424 Coils Coil 241 310 - -
Seca3g08675 424 MobiDBLite consensus disorder prediction 410 424 - -
Seca3g08675 424 Pfam bZIP transcription factor 225 283 IPR004827 GO:0003700|GO:0006355
Seca3g08675 424 CDD bZIP_plant_RF2 226 275 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08675 Seca-Chr3 221448926 221453501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08675 19 354 bZIP Transcription Factor Family AT1G06070 74.041 7.00e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g08675 bZIP_1 4.7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08675 - - gmx:100786738 647.121