Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08674 ATGCCGCTTCCGAGCAAATCTATGGAATCAGAGGAATGGGGAAGCCCCTCCAACAACCTATGGGTTGGAAATCTGGCGCCGGAAGTCACCGACGCCGATCTCATGGACCTCTTCGCTCAATACGGTGCGCTTGATAGCGTCACAACCTACTCCTCTCGCAGTTACGCTTTTGTCTTCTTCAACCGCATCGAAGATGCTAAGGCCGCTAAAACCGCCTTGCAAGGCACTCCTCTGCGCGGTTTTTCTATCAAAATTGAGTTTGCCAGACCGGCTAAGCCATGTAAACAACTATGGGTCGGTGGTATTAGCCAAGCTGTTACCAAGGAAGAATTGGAAGGTGAGTTTCGTAAATTCGGTAAGATTGACGATTTTAAGTTCTTTAGAGATCGCAATACCGCTTGTGTTGAGTTTCTCAGTTTGGATGATGCTACTCGGGCCATGAAAATCATGAATGGAAAGCGTTTAGGTGGCGACCAGATTCGTGTAGACTTCCTTCGATCACAATCTACAAAAAGAGATCTTTTGGTTGAATTTGGACAGTTTCAGGCAAGACCACAGCATTCACAACCTTCGATGGGGAGGGATGGTCAACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCTTTTCAGATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTACAAGACATTATGCATTTGTTGAATTTAGAAGTGTTGATGAAGCTCGGCGTGCCAAAGAGGGCCTTCAAGGACGGCTTTTTAATGATTCTCGAATAACAATTATGTACTCAAGCAGTGAGCTGGCACCTGGAAAAGATTACCCTGGTTTTTATCCTGGAAGTAAAGGGCCAATATCTGATGGGTTACTTAATGAGCATCCATTTCGACCACTACACATGGATGCGTTTGGTCATAGTCGTCCTATGGTTCCAAATAATTTTCCTGGACAGTTGCCACCTGGTGGTATTGTTGGACCTAATGCACCAACATTGCGACCTTTTGGTCAAGGTCATGAACCTCTTATTACTGGTCCTGAGTTTAATGAGATGGGCACACTCCACAAATTTCAGGATGGTAACTCTATAAGTCAGGTAGGTCCAAACTGGAAAAAGCCATCTCCTCCTGCACCAGGATTGCTTCCTTCTCCTGTGCCTGGTATTAGGCCTCCCACAAGATCCACCTCCGGTGCATGGGATGTACTTAACAAGAACCCATTTCAGAGAGAACCTAAACGTTCGAGGACAGATGGAGCTTTGCTCATTGGTGATGCTCCATTTCCTTCAAGGAATATAGATGATCGTGGATTAGGAATGGAACAAACATATGGAGTTGATCCAGTTATTGATGGAGGTGGTTCTGGTCCAAAGAGTCATCTTGGTTCAATGGGTACTAGGATCACGGCTACAGTACCTGGTTCAGTCGAACCTGATATTGATCATATTTGGCGTGGAATTATTGCAAAAGGAGGAACACCTGTTTGTCATGCTAGATGTGTACCTATCGGGAAAGGGATAGGGACTCAGCTTCCTGATGTCATCGATTGCGCAGCTAGGACAGGATTGGATATGCTCACAAAACACTATGCTGATGCAATTGGTTTTGACGTTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACAGAATTCCTTCGCTACCTCAAAGTAAAAAACCGTGCCGGGGTTGCCAAGCTTGTTGATAACACCACTTTATTTTTGGTACCTCCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACAGGACCTGAACGTTTATATGGTGTGGTTCTTAAATTTCCACCAGTTCCAAGTAGCACACCAATGCAACAATCAATGTGTTTGCCTTCGTCGTCAACTCAGTATATGCAGCATATTCCTCCTATGCAAATCGAGTATGGTTCAATCTCTGTAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTGTTGCATGAAGATTCTAAGCTTCCTCCAAAACCATTTCATCCAGTTACAAGTGGGCCTCCTTCAGTTCATTCTGTTCCTCCTGATTATGCTCCTACTAATACTGCTTCTGCATCCCAAGCTGGAGTTACATTAACACCTGAGCTCATTGCAACTTTAACTTCTTTACTCCCGGCAACTACACAATCATCTGCCACTGTTGGTGCTAAGACAGGAGTTGACCCATCAACTATGAAGCCACCATTTCCTCCTATTGCACCTAAGGATGGAAATCAATCTCATTTGTGGAAACAAGGTCATCAAACTGCAGATCCACCCAGTCATCATTCTCAACAGTTTGGGAGTACGTATAACATTCACAGTGCTCAATATCAGGTTTTTCCACCAGCATCTACTCCCAACCACCCTGCTCAATCGGTATCTGGCTCCGACAGTTCCCATTTCCAAGATACTGCTGCCACCCTGCAGCACCTAGGTACTGTTTCATCTCATCCCATGTCTAATTTCATCATACCTTCTCAAAGTGAACAGGTAGTTGTATCTTCTCAAGTCAGTCAGCAGCATCATGTTGAACTATCCCCCAGCACCCAGAAAGGCTATGTTCAGGGAACAGATGCCTCTGTTTTATATAGTTCCAAGTCCTTCCAGCAACCTAACAATTTTATTGCCTCATCTAATCAAGTTCCCAATGCTAATGCTTCACAACAACAAACTTTGACGCCCTATACAGCGGACAAAGTTGGAGTTGGTCAGGACATGTCTGAATTGGAAGCTGATAAGAACCAGAGATACCAGTCAACACTACAGTTTGCTGCCAACCTTCTCTTCCAGATACAGCAAAAGCAAACACAAGGAGGGCAGGGGCCTGGAAATCAACAATAA 2859 0.4418 MPLPSKSMESEEWGSPSNNLWVGNLAPEVTDADLMDLFAQYGALDSVTTYSSRSYAFVFFNRIEDAKAAKTALQGTPLRGFSIKIEFARPAKPCKQLWVGGISQAVTKEELEGEFRKFGKIDDFKFFRDRNTACVEFLSLDDATRAMKIMNGKRLGGDQIRVDFLRSQSTKRDLLVEFGQFQARPQHSQPSMGRDGQPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPTRHYAFVEFRSVDEARRAKEGLQGRLFNDSRITIMYSSSELAPGKDYPGFYPGSKGPISDGLLNEHPFRPLHMDAFGHSRPMVPNNFPGQLPPGGIVGPNAPTLRPFGQGHEPLITGPEFNEMGTLHKFQDGNSISQVGPNWKKPSPPAPGLLPSPVPGIRPPTRSTSGAWDVLNKNPFQREPKRSRTDGALLIGDAPFPSRNIDDRGLGMEQTYGVDPVIDGGGSGPKSHLGSMGTRITATVPGSVEPDIDHIWRGIIAKGGTPVCHARCVPIGKGIGTQLPDVIDCAARTGLDMLTKHYADAIGFDVVFFLPDSEEDFASYTEFLRYLKVKNRAGVAKLVDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPSSTPMQQSMCLPSSSTQYMQHIPPMQIEYGSISVKEEQVLPMDYNRLLHEDSKLPPKPFHPVTSGPPSVHSVPPDYAPTNTASASQAGVTLTPELIATLTSLLPATTQSSATVGAKTGVDPSTMKPPFPPIAPKDGNQSHLWKQGHQTADPPSHHSQQFGSTYNIHSAQYQVFPPASTPNHPAQSVSGSDSSHFQDTAATLQHLGTVSSHPMSNFIIPSQSEQVVVSSQVSQQHHVELSPSTQKGYVQGTDASVLYSSKSFQQPNNFIASSNQVPNANASQQQTLTPYTADKVGVGQDMSELEADKNQRYQSTLQFAANLLFQIQQKQTQGGQGPGNQQ. 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08674 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Seca3g08674 952 CDD SPOC_FPA-like 488 608 - -
Seca3g08674 952 CDD RRM_SF 97 163 - -
Seca3g08674 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Seca3g08674 952 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Seca3g08674 952 PANTHER RNA RECOGNITION MOTIF-CONTAINING 6 88 - -
Seca3g08674 952 CDD RRM_SF 20 86 - -
Seca3g08674 952 SUPERFAMILY RNA-binding domain, RBD 16 170 IPR035979 GO:0003676
Seca3g08674 952 Pfam SPOC domain 483 600 IPR012921 -
Seca3g08674 952 MobiDBLite consensus disorder prediction 724 773 - -
Seca3g08674 952 MobiDBLite consensus disorder prediction 753 773 - -
Seca3g08674 952 FunFam Flowering time control protein FPA 10 92 - -
Seca3g08674 952 Gene3D - 187 277 IPR012677 -
Seca3g08674 952 FunFam flowering time control protein FPA 194 286 - -
Seca3g08674 952 Gene3D - 4 92 IPR012677 -
Seca3g08674 952 Gene3D - 93 173 IPR012677 -
Seca3g08674 952 MobiDBLite consensus disorder prediction 664 698 - -
Seca3g08674 952 MobiDBLite consensus disorder prediction 672 686 - -
Seca3g08674 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Seca3g08674 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 161 IPR000504 GO:0003723
Seca3g08674 952 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Seca3g08674 952 CDD RRM_SF 202 269 - -
Seca3g08674 952 SMART rrm1_1 96 163 IPR000504 GO:0003723
Seca3g08674 952 SMART rrm1_1 201 269 IPR000504 GO:0003723
Seca3g08674 952 SMART rrm1_1 19 86 IPR000504 GO:0003723
Seca3g08674 952 MobiDBLite consensus disorder prediction 785 807 - -
Seca3g08674 952 SUPERFAMILY RNA-binding domain, RBD 190 273 IPR035979 GO:0003676
Seca3g08674 952 FunFam Flowering time control protein FPA isoform A 93 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08674 Seca-Chr3 221428096 221434380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08674 19 262 Eukaryotic Initiation Factors Gene Family AT2G36660 25.940 2.71e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08674 - - gmx:100806555 1387.86