Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08667 ATGTTTGTTCAGAATGTTCATACTTTGTTATGGTGTTATGTACTAAAGTGTGTTGTGTTTGGTGTTTTTTCTATGCAGCCGAAGCAAATTCATGAGATTAAGGACTTCCTTCTTACTGCTAGGAGGAAGGATGCACGCTCTGTGAAAATCAAGCGGAGCAGAGATGTGGTGAAGTTCAAGGTCCGTTGCTCCAAGTACCTCTACACCTTGTGCGTGTTTGACACTGAGAAGGCTGATAAGTTGAAGCAATCTCTTCCTCCTGGTTTGAGTGTGCAGGACCTGTGA 285 0.4351 MFVQNVHTLLWCYVLKCVVFGVFSMQPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDTEKADKLKQSLPPGLSVQDL. 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08667 94 PANTHER 60S RIBOSOMAL PROTEIN L38 27 93 IPR002675 GO:0003735|GO:0005840|GO:0006412
Seca3g08667 94 Pfam Ribosomal L38e protein family 27 93 IPR002675 GO:0003735|GO:0005840|GO:0006412
Seca3g08667 94 Gene3D - 26 94 IPR038464 -
Seca3g08667 94 FunFam 60S ribosomal protein L38 26 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08667 Seca-Chr3 221227033 221228205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08667 27 94 Cytoplasmic Ribosomal Protein Gene Family AT3G59540 94.118 7.74e-43 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08667 K02923 - mnt:112094472 138.272