Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08666 ATGGACATTAGTCCTTACACTTCAAAGCTGAAAACAACACACTTTGGTCATGAAGTAGTAGCTTCCATAGACATGCACAGGAATAACCATCCCCAACACAGTCACACATCAACAAGCCGTTCCTCTGATTCAAGTGAGCCCTGTGATGATTCTTCTAAATGGGCCTCTAAACTTCTCAAAGAGTGTGCTATTGCAATATCACAAAGAGACTCCACAAGAATCCACCACCTTCTATGGATGTTAAATGAGCTTTCTTCCCCTTATGGTGACATGGATCAGAAACTAGCTTCTTACTTCTTGCAAGCTCTATTCTGCAAGGCTACAGAGTCAGGGCATAAGTGTTACAAGACTCTCTCTTCTGTTGCTGACAAAAACCACTCCTTTGATTCAGCCAGAAAGTTGATACTAAAGTTTCAAGAGGTTAGCCCTTGGACTACTTTTGGACATGTTGCTTCCAATGGTGCTATTTTGGAAGCCTTAGAAGGTGAGACTAAGCTTCACATAATTGATATTAGCAACACCCTTTGCACTCAATGGCCTACTCTGTTGGAAGCCCTGGCTACCAGAAATGATGACACTCCTCACTTGAAACTCACTGTTGTGGTTCTTACTGCCAGCTTAGTTGGGTCTGTGATGAAGGAAGTTGGGCAGAGGATGGAGAAATTTGCAAGGCTAATGGGTGTGCCTTTTGAATTTAATGTGGTTTGTGGGTTGAGTCATCTCACTAAAGAAGGGCTTGGAGTTCAAGAAGATGAGGCAATTGCTGTGAATTGTGTTGGGGCATTGAGGAGAGTTGAGGTGGAAGAAAGGGATGATTTGATTCACATGTTCAAATCACTTGGTCCTAAAGTTGTGACTGTTGTTGAGGAAGAAGCTGATTTTTGTAGCTCAAGGGGTGATTTTGTGAAGTGCTTTGAAGAGTGCCTTAAGTTTTACACACTTTACTTTGAGATGCTTGAGGAGAGTTTCCCACCAACAAGTAATGAGAGGTTGATGTTGGAGAGGGAGTGTTCAAGAAGCATAGTTAGGGTTTTGGCTTGTGGTGGTGGTGGTAATAATAATAGTAATGATGATGATGAAATTGAAGAGGAGGATGGTGATTATTGTGAGAGAAGGGAGAGAGGAACACAATGGTGTGAAAGGCTTAGGAGTGCATTTACCCCAATTGGATTCAGTGATGATGTTGTGGATGATGTCAAAGCATTGCTAAAGAGGTACCAAGCTGGGTGGTCACTTGTGGTGCCTCAAGGAGATGATCATCTCTCAGGAATTTACCTCACATGGAAGGAGGAACCAGTAGTTTGGGCTTCAGCATGGAAACCCTAG 1326 0.4291 MDISPYTSKLKTTHFGHEVVASIDMHRNNHPQHSHTSTSRSSDSSEPCDDSSKWASKLLKECAIAISQRDSTRIHHLLWMLNELSSPYGDMDQKLASYFLQALFCKATESGHKCYKTLSSVADKNHSFDSARKLILKFQEVSPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLEALATRNDDTPHLKLTVVVLTASLVGSVMKEVGQRMEKFARLMGVPFEFNVVCGLSHLTKEGLGVQEDEAIAVNCVGALRRVEVEERDDLIHMFKSLGPKVVTVVEEEADFCSSRGDFVKCFEECLKFYTLYFEMLEESFPPTSNERLMLERECSRSIVRVLACGGGGNNNSNDDDEIEEEDGDYCERRERGTQWCERLRSAFTPIGFSDDVVDDVKALLKRYQAGWSLVVPQGDDHLSGIYLTWKEEPVVWASAWKP. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08666 441 ProSiteProfiles GRAS family profile. 46 440 IPR005202 -
Seca3g08666 441 MobiDBLite consensus disorder prediction 32 48 - -
Seca3g08666 441 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 54 430 IPR005202 -
Seca3g08666 441 Pfam GRAS domain family 57 440 IPR005202 -
Seca3g08666 441 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08666 Seca-Chr3 221189538 221190863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08666 26 441 GRAS Transcription Factor Family AT4G37650 51.835 4.25e-144 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g08666 GRAS 6e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08666 - - gmx:100818806 674.855