Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g08657 ATGGACTACCCTTTTTCCCCTAAGGGAAGAGGAATTGGGTATTGGCAGTCTCCTAGAGCTCAGTTGGAGGGATCAACATCATTAGATGGTGGAATGGGCAATTCACTATCAGAGGATATGCCTAACAGCTTCTCTGAGCTCATGAACTTTGATACTTATCATGGTTTATGTACTAGTCCATCCATGAGTGATCAGCTTTTGGCTAATGAGCTTCCATCATTTGCCTCAGTACCATATCCACCATCTGATGGATTCAATCTAGTTGAACAGAACAGTGGACAGTTTTTTGTGACAGGAGTTTACGGAAATTACAGCAATCTGGAAAGCTCTCCCGCTTATGCGGAGAAACTTGTGTGTCAGCAAATGGATACCCTACTTGGTTTATTAGATGACACAAATGATGCAAATAACTTAAATTCAAAGCAAAAAAATAATGGCTCTTTGCAACATATTAATACCTTTGATATGGGAGATAACATAATCTCCAGGCCACCTGGTTTGTCACTTGATGAGAGAATGTTGAGGGCTTTGTCCTTCTTTAAGGAATCTGCTGGTGGGGGAATACTGGCACAAGTTTGGGTACCCTTAAAGCATGGTAGCCAAGTCATCTTAAGCACGAGTGAGCAACCATATTTACTAGATCAAATGCTTGCAGGGTATCGTGAAGTGTCAAGGACATATACATTTTCTGCAGAAGGAAAACCAGGTTGTTTCCCTGGACTTCCTGGTCGTGTGTTTATCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTACAGTAAGAGTGAGTACTTGAGGGCTGAGCATGCAAAAAATCACAAGGTTCGTGGATCAATCGCTTTTCCCATATTTGATGTGCACTCCGAACTGCCATGCTGTGCTGTACTGGAACTTGTTACTACAAAGGAAAAGCCTGATTTTGACAAAGAATTGGAAATTGTTTGTCATGCACTCCAGCTCGTAAATTTAAGGACTACTATGCCTCTTCGACTTCTTCCTGAGTGTCTTTCAAACAATAAAAGAGCTGCTTTAATGGAAATAATTGATGTGTTACGATCTGTGTGTCATGCACATAGATTGCCGCTGGCACTGACATGGATTCCTTGTCATTACACTGAGGGCACAAGAGGTGAAGCTACAAAGTTACAAATTAAAGAGGGTCGTTCAAGTTCTAGTGATAAAAGCATACTGTGCATCGAAGAATCAGCTTGCTATATAACTGATAGAGTGATGGAAGGATTTGTTCGTGCATGCATTGAACATCATCTTGAAGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAGGAATACGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTACAATTTGAATGCTGCAGTTGCAATTAGGCTAAGAAGTACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAGAGGGAGTTCAGAACAGCAACTTCTATTAGACAATCTCTCAGGTACCATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCGGATGCCGAATTATCAGGAATAGAAAGTTCACAAGTGGGGTTTGAAAAGAAAAATGCCCCCAGTTTTTTTCCTTTGTCTAGGGGAAACTCTCAAATACCATTAATAAATGGTAACCATGATTCTGTCCAGAAGATGTCATTGAAGGCATCTAACCTAAGAAACAATGGAAGTGAGCCTTCACGTAACCAGGAAGGAAATGGATCAAAAAGGCAGGTTGAGAAAAATAGAAGTACATCAGAGAAGATTGTTAGCTTGAGTGTTCTTCAACAATACTTTTCTGGTAGTCTGAAGAATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCATCATGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCATTGAAGAAAATACAAACTGTGCTTGACTCTGTCCAGGGAGTGGAAGGTGCATTGAAGTTTGATCCCTTGGTGGGAGCTTTTGTGGCAGGAGGGTCAATCATCCAAGAGATTGATGCACATAAAAGTCTTCTATTCCCTGAGAAAAGTTCTGTAAAAGACCCTAGGCCTATTACACAAGATGCAGTCTCAGTACCGCATGCACCTTGTAGTGAAGGTGAGAACTCAGCAATTAAGCTGGAGAGACAATTGAAGAAAACCAAGTCTTCTTCCATTGATGGTAGTGAAGATTCAAAATCAATGGCAATGGATGACGGGTCTTGCCAGCCAGCACAGGATTGTCTAGAACAACCTTGTTCGGGCTCCATTCTTGCAAAAGAAGTGGATAAATGTGTTCTGAGAAACAATCCAAGCTCCTTGATTGCTGATGGTATGGACATTTTTGAGGACAGGGATGATGAGGTTGTTGAACTTAACCACCCTACTTCTTCAAGCTTGACAGACTCATCTAATGGCTCTGGTTCAATGATGCATGATACCTCATCAGGTTCTCAGAGCTTTGAGAATCAGAAGCAGCCCAAAGACAAATCAACTATCGTTGATAGTGGGTCAAAAATTATTGTCAAAGCTACCTATGGAGAAGACACCGTTCGTTTCAAGTTTGATCCATGTGCAGGTTGTTTCAAGCTATATGAAGAAGTTGCAACAAGATTCAAACTACAAAATGGATCATTCCAGCTCAAGTATCTAGATGATGAAGAGGAATGGGTGATGTTGATGAATGACTCAGATTTGCAAGAGTGTATCGATATAATGGATGATATCGGCACGCGAAGTGTGAGGTTTCTTGTTCGTGATATGCCTTGTGTTTTTGGCAGCTCTGGCAGTAGCAGTAGCTACTTGGGAGGCAGCTCCTAG 2877 0.4108 MDYPFSPKGRGIGYWQSPRAQLEGSTSLDGGMGNSLSEDMPNSFSELMNFDTYHGLCTSPSMSDQLLANELPSFASVPYPPSDGFNLVEQNSGQFFVTGVYGNYSNLESSPAYAEKLVCQQMDTLLGLLDDTNDANNLNSKQKNNGSLQHINTFDMGDNIISRPPGLSLDERMLRALSFFKESAGGGILAQVWVPLKHGSQVILSTSEQPYLLDQMLAGYREVSRTYTFSAEGKPGCFPGLPGRVFISKVPEWTSNVGYYSKSEYLRAEHAKNHKVRGSIAFPIFDVHSELPCCAVLELVTTKEKPDFDKELEIVCHALQLVNLRTTMPLRLLPECLSNNKRAALMEIIDVLRSVCHAHRLPLALTWIPCHYTEGTRGEATKLQIKEGRSSSSDKSILCIEESACYITDRVMEGFVRACIEHHLEEGKGIAGKALQSNHPFFYPDVKEYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICRSLRTVSDAELSGIESSQVGFEKKNAPSFFPLSRGNSQIPLINGNHDSVQKMSLKASNLRNNGSEPSRNQEGNGSKRQVEKNRSTSEKIVSLSVLQQYFSGSLKNAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGALKFDPLVGAFVAGGSIIQEIDAHKSLLFPEKSSVKDPRPITQDAVSVPHAPCSEGENSAIKLERQLKKTKSSSIDGSEDSKSMAMDDGSCQPAQDCLEQPCSGSILAKEVDKCVLRNNPSSLIADGMDIFEDRDDEVVELNHPTSSSLTDSSNGSGSMMHDTSSGSQSFENQKQPKDKSTIVDSGSKIIVKATYGEDTVRFKFDPCAGCFKLYEEVATRFKLQNGSFQLKYLDDEEEWVMLMNDSDLQECIDIMDDIGTRSVRFLVRDMPCVFGSSGSSSSYLGGSS. 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g08657 958 SMART PB1_new 858 940 IPR000270 GO:0005515
Seca3g08657 958 CDD PB1_NLP 859 939 IPR034891 -
Seca3g08657 958 MobiDBLite consensus disorder prediction 572 598 - -
Seca3g08657 958 SUPERFAMILY CAD & PB1 domains 849 942 - -
Seca3g08657 958 MobiDBLite consensus disorder prediction 731 746 - -
Seca3g08657 958 Pfam RWP-RK domain 604 651 IPR003035 -
Seca3g08657 958 ProSiteProfiles PB1 domain profile. 858 940 IPR000270 GO:0005515
Seca3g08657 958 ProSiteProfiles RWP-RK domain profile. 583 671 IPR003035 -
Seca3g08657 958 MobiDBLite consensus disorder prediction 813 851 - -
Seca3g08657 958 MobiDBLite consensus disorder prediction 572 587 - -
Seca3g08657 958 MobiDBLite consensus disorder prediction 708 762 - -
Seca3g08657 958 Gene3D - 854 938 - -
Seca3g08657 958 Pfam PB1 domain 861 939 IPR000270 GO:0005515
Seca3g08657 958 PANTHER PROTEIN NLP8 136 951 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g08657 Seca-Chr3 221027339 221035188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g08657 1 955 NLP Transcription Factor Family AT2G43500 49.897 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca3g08657 PB1 5.7e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g08657 - - gmx:100804426 1463.36